Analysis of interatomic Contacts of Structural Units in PDB entry:
2O19

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2O19 entry

There are 4 chains in PDB entry 2O19 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	C 1	T 7
D	C 1	T 8
A	MET 1	HIS 658
B	MET 1	ASP 590

There are 59 helices in PDB entry 2O19. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	17	Right-handed alpha
Helix 2	2	A	50	54	Right-handed 310
Helix 3	3	A	55	60	Right-handed 310
Helix 4	4	A	62	66	Right-handed 310
Helix 5	5	A	81	95	Right-handed alpha
Helix 6	6	A	105	119	Right-handed alpha
Helix 7	7	A	122	129	Right-handed alpha
Helix 8	8	A	138	148	Right-handed alpha
Helix 9	9	A	155	186	Right-handed alpha
Helix 10	10	A	198	215	Right-handed alpha
Helix 11	11	A	243	250	Right-handed 310
Helix 12	12	A	259	267	Right-handed alpha
Helix 13	13	A	293	306	Right-handed alpha
Helix 14	14	A	308	322	Right-handed alpha
Helix 15	15	A	337	342	Right-handed 310
Helix 16	16	A	343	355	Right-handed alpha
Helix 17	17	A	374	378	Right-handed 310
Helix 18	18	A	396	413	Right-handed alpha
Helix 19	19	A	444	450	Right-handed 310
Helix 20	20	A	492	502	Right-handed alpha
Helix 21	21	A	503	507	Right-handed 310
Helix 22	22	A	509	519	Right-handed alpha
Helix 23	23	A	524	526	Right-handed 310
Helix 24	24	A	527	538	Right-handed alpha
Helix 25	25	A	551	561	Right-handed alpha
Helix 26	26	A	562	567	Right-handed 310
Helix 27	27	A	568	582	Right-handed alpha
Helix 28	28	A	587	608	Right-handed alpha
Helix 29	29	A	609	615	Right-handed 310
Helix 30	30	A	648	658	Right-handed alpha
Helix 31	31	B	8	17	Right-handed alpha
Helix 32	32	B	50	55	Right-handed alpha
Helix 33	33	B	56	60	Right-handed 310
Helix 34	34	B	81	95	Right-handed alpha
Helix 35	35	B	105	120	Right-handed alpha
Helix 36	36	B	122	127	Right-handed alpha
Helix 37	37	B	138	147	Right-handed alpha
Helix 38	38	B	155	187	Right-handed alpha
Helix 39	39	B	198	215	Right-handed alpha
Helix 40	40	B	243	250	Right-handed 310
Helix 41	41	B	258	270	Right-handed alpha
Helix 42	42	B	293	306	Right-handed alpha
Helix 43	43	B	308	322	Right-handed alpha
Helix 44	44	B	337	342	Right-handed 310
Helix 45	45	B	343	355	Right-handed alpha
Helix 46	46	B	374	378	Right-handed 310
Helix 47	47	B	396	413	Right-handed alpha
Helix 48	48	B	444	450	Right-handed 310
Helix 49	49	B	451	457	Right-handed alpha
Helix 50	50	B	493	502	Right-handed alpha
Helix 51	51	B	503	507	Right-handed 310
Helix 52	52	B	509	519	Right-handed alpha
Helix 53	53	B	527	538	Right-handed alpha
Helix 54	54	B	551	561	Right-handed alpha
Helix 55	55	B	562	567	Right-handed alpha
Helix 56	56	B	568	583	Right-handed alpha
Helix 57	57	B	588	608	Right-handed alpha
Helix 58	58	B	610	615	Right-handed 310
Helix 59	59	B	648	658	Right-handed alpha

There are 8 sheets in PDB entry 2O19. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	36	40	anti-parallel
Strand 4	A	2	6	parallel
Strand 5	A	97	101	parallel
Strand 6	A	130	131	parallel
Strand 7	A	150	151	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	229	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	432	443	anti-parallel
Strand 4	A	418	429	anti-parallel
Strand 5	A	273	286	anti-parallel
Strand 6	A	472	484	anti-parallel
Strand 7	A	220	229	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	543	first strand
Strand 2	A	548	550	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	36	40	anti-parallel
Strand 4	B	2	6	parallel
Strand 5	B	97	101	parallel
Strand 6	B	130	131	parallel
Strand 7	B	150	151	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	75	77	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	229	first strand
Strand 2	B	235	241	anti-parallel
Strand 3	B	432	443	anti-parallel
Strand 4	B	418	429	anti-parallel
Strand 5	B	273	286	anti-parallel
Strand 6	B	472	484	anti-parallel
Strand 7	B	220	229	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	547	550	anti-parallel
Strand 3	B	541	544	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2O19

Analysis of interatomic Contacts of Structural Units in PDB entry:
2O19