Analysis of interatomic Contacts of Structural Units in PDB entry:
2O7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O7P entry

There are 2 chains in PDB entry 2O7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -4ALA 367
B
 THR -4ALA 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2O7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 15Right-handed alpha
Helix 2
2
A
16 18Right-handed 310
Helix 3
3
A
50 60Right-handed alpha
Helix 4
4
A
61 64Right-handed 310
Helix 5
5
A
83 92Right-handed alpha
Helix 6
6
A
110 118Right-handed alpha
Helix 7
7
A
127 135Right-handed alpha
Helix 8
8
A
135 144Right-handed alpha
Helix 9
9
A
166 170Right-handed 310
Helix 10
10
A
173 186Right-handed alpha
Helix 11
11
A
194 201Right-handed alpha
Helix 12
12
A
207 211Right-handed 310
Helix 13
13
A
220 224Right-handed 310
Helix 14
14
A
242 246Right-handed 310
Helix 15
15
A
280 291Right-handed alpha
Helix 16
16
A
301 312Right-handed alpha
Helix 17
17
B
-2 16Right-handed alpha
Helix 18
18
B
50 60Right-handed alpha
Helix 19
19
B
61 64Right-handed 310
Helix 20
20
B
86 92Right-handed alpha
Helix 21
21
B
112 118Right-handed alpha
Helix 22
22
B
127 133Right-handed alpha
Helix 23
23
B
135 144Right-handed alpha
Helix 24
24
B
173 187Right-handed alpha
Helix 25
25
B
194 201Right-handed alpha
Helix 26
26
B
207 211Right-handed 310
Helix 27
27
B
213 218Right-handed alpha
Helix 28
28
B
220 224Right-handed 310
Helix 29
29
B
242 246Right-handed 310
Helix 30
30
B
280 291Right-handed alpha
Helix 31
31
B
301 311Right-handed alpha
Helix 32
32
B
339 344Right-handed 310
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There are 6 sheets in PDB entry 2O7P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 42first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
96 100parallel
Strand 5
A
122 124parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 271first strand
Strand 2
A
251 255parallel
Strand 3
A
228 232parallel
Strand 4
A
189 193parallel
Strand 5
A
295 298parallel
Strand 6
A
148 156parallel
Strand 7
A
316 322parallel
Strand 8
A
359 365anti-parallel
Strand 9
A
349 356anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
278 279anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 42first strand
Strand 2
B
28 33anti-parallel
Strand 3
B
68 70anti-parallel
Strand 4
B
96 97parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 271first strand
Strand 2
B
251 255parallel
Strand 3
B
228 232parallel
Strand 4
B
189 193parallel
Strand 5
B
295 298parallel
Strand 6
B
148 156parallel
Strand 7
B
316 322parallel
Strand 8
B
359 365anti-parallel
Strand 9
B
349 356anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
278 279anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il