Analysis of interatomic Contacts of Structural Units in PDB entry:
2O8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O8Y entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 2O8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 165SER 336
A
VAL 343MSE 344
A
SER 346ALA 459
B
PHE 165GLN 341
B
VAL 343MSE 344
B
SER 346ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2O8Y. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
169 177Right-handed alpha
Helix 2
2
A
184 188Right-handed 310
Helix 3
3
A
226 237Right-handed alpha
Helix 4
4
A
238 240Right-handed 310
Helix 5
5
A
269 275Right-handed alpha
Helix 6
6
A
276 280Right-handed 310
Helix 7
7
A
284 305Right-handed alpha
Helix 8
8
A
313 315Right-handed 310
Helix 9
9
A
351 355Right-handed 310
Helix 10
10
A
356 361Right-handed alpha
Helix 11
11
A
365 383Right-handed alpha
Helix 12
12
A
395 397Right-handed 310
Helix 13
13
A
398 405Right-handed alpha
Helix 14
14
A
409 414Right-handed alpha
Helix 15
15
A
422 437Right-handed alpha
Helix 16
16
A
440 444Right-handed 310
Helix 17
17
A
446 459Right-handed alpha
Helix 18
18
B
169 177Right-handed alpha
Helix 19
19
B
227 240Right-handed alpha
Helix 20
20
B
269 275Right-handed alpha
Helix 21
21
B
276 280Right-handed 310
Helix 22
22
B
284 305Right-handed alpha
Helix 23
23
B
313 315Right-handed 310
Helix 24
24
B
351 355Right-handed 310
Helix 25
25
B
356 362Right-handed alpha
Helix 26
26
B
366 383Right-handed alpha
Helix 27
27
B
395 397Right-handed 310
Helix 28
28
B
398 405Right-handed alpha
Helix 29
29
B
409 414Right-handed alpha
Helix 30
30
B
422 437Right-handed alpha
Helix 31
31
B
440 444Right-handed 310
Helix 32
32
B
446 458Right-handed alpha
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There are 8 sheets in PDB entry 2O8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 167first strand
Strand 2
A
248 252parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
208 214anti-parallel
Strand 5
A
200 205anti-parallel
Strand 6
A
191 193anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
258 263anti-parallel
Strand 4
B
209 215anti-parallel
Strand 5
B
199 204anti-parallel
Strand 6
B
191 193anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 344first strand
Strand 2
B
363 364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il