Analysis of interatomic Contacts of Structural Units in PDB entry:
2OB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OB1 entry

There are 3 chains in PDB entry 2OB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 10TRP 328
B
TYR 10TRP 328
C
TYR 10TRP 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 2OB1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
34 56Right-handed alpha
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
71 96Right-handed alpha
Helix 5
5
A
111 119Right-handed alpha
Helix 6
6
A
129 143Right-handed alpha
Helix 7
7
A
143 151Right-handed alpha
Helix 8
8
A
178 190Right-handed alpha
Helix 9
9
A
203 207Right-handed 310
Helix 10
10
A
208 223Right-handed alpha
Helix 11
11
A
242 255Right-handed alpha
Helix 12
12
A
267 273Right-handed alpha
Helix 13
13
A
274 276Right-handed 310
Helix 14
14
A
286 293Right-handed alpha
Helix 15
15
A
295 306Right-handed alpha
Helix 16
16
A
310 319Right-handed alpha
Helix 17
17
B
10 22Right-handed alpha
Helix 18
18
B
34 56Right-handed alpha
Helix 19
19
B
56 69Right-handed alpha
Helix 20
20
B
71 96Right-handed alpha
Helix 21
21
B
111 119Right-handed alpha
Helix 22
22
B
129 143Right-handed alpha
Helix 23
23
B
143 150Right-handed alpha
Helix 24
24
B
178 190Right-handed alpha
Helix 25
25
B
203 207Right-handed 310
Helix 26
26
B
208 221Right-handed alpha
Helix 27
27
B
242 255Right-handed alpha
Helix 28
28
B
267 273Right-handed alpha
Helix 29
29
B
274 276Right-handed 310
Helix 30
30
B
286 294Right-handed alpha
Helix 31
31
B
295 306Right-handed alpha
Helix 32
32
B
310 319Right-handed alpha
Helix 33
33
C
10 23Right-handed alpha
Helix 34
34
C
34 56Right-handed alpha
Helix 35
35
C
56 69Right-handed alpha
Helix 36
36
C
71 96Right-handed alpha
Helix 37
37
C
111 119Right-handed alpha
Helix 38
38
C
129 143Right-handed alpha
Helix 39
39
C
143 151Right-handed alpha
Helix 40
40
C
178 188Right-handed alpha
Helix 41
41
C
203 207Right-handed 310
Helix 42
42
C
208 221Right-handed alpha
Helix 43
43
C
242 253Right-handed alpha
Helix 44
44
C
267 274Right-handed alpha
Helix 45
45
C
286 293Right-handed alpha
Helix 46
46
C
295 306Right-handed alpha
Helix 47
47
C
310 319Right-handed alpha
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There are 3 sheets in PDB entry 2OB1. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 166first strand
Strand 2
A
169 173anti-parallel
Strand 3
A
122 128parallel
Strand 4
A
99 104parallel
Strand 5
A
196 201parallel
Strand 6
A
226 233parallel
Strand 7
A
321 328anti-parallel
Strand 8
A
280 285anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 166first strand
Strand 2
B
169 173anti-parallel
Strand 3
B
122 128parallel
Strand 4
B
99 104parallel
Strand 5
B
196 201parallel
Strand 6
B
226 233parallel
Strand 7
B
321 328anti-parallel
Strand 8
B
280 285anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
162 166first strand
Strand 2
C
169 173anti-parallel
Strand 3
C
122 128parallel
Strand 4
C
99 104parallel
Strand 5
C
196 201parallel
Strand 6
C
226 233parallel
Strand 7
C
321 328anti-parallel
Strand 8
C
280 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il