Analysis of interatomic Contacts of Structural Units in PDB entry:
2OBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OBD entry

There is 1 chain in PDB entry 2OBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5SER 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2OBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 24Right-handed alpha
Helix 2
2
A
26 38Right-handed alpha
Helix 3
3
A
104 108Right-handed 310
Helix 4
4
A
162 171Right-handed alpha
Helix 5
5
A
171 206Right-handed alpha
Helix 6
6
A
251 255Right-handed 310
Helix 7
7
A
267 280Right-handed alpha
Helix 8
8
A
288 299Right-handed alpha
Helix 9
9
A
305 307Right-handed 310
Helix 10
10
A
308 313Right-handed alpha
Helix 11
11
A
315 319Right-handed 310
Helix 12
12
A
354 358Right-handed 310
Helix 13
13
A
402 416Right-handed alpha
Helix 14
14
A
416 435Right-handed alpha
Helix 15
15
A
436 441Right-handed 310
Helix 16
16
A
464 474Right-handed alpha
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There are 6 sheets in PDB entry 2OBD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
249 250anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
11 16anti-parallel
Strand 4
A
261 266anti-parallel
Strand 5
A
454 462anti-parallel
Strand 6
A
442 451anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
53 77anti-parallel
Strand 3
A
81 101anti-parallel
Strand 4
A
111 132anti-parallel
Strand 5
A
135 154anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
235 238anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
320 325anti-parallel
Strand 3
A
337 349anti-parallel
Strand 4
A
330 334anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
320 325anti-parallel
Strand 3
A
337 349anti-parallel
Strand 4
A
361 376anti-parallel
Strand 5
A
379 396anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il