Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ODL entry

There is 1 chain in PDB entry 2ODL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 70ASP 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2ODL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
175 182Right-handed alpha
Helix 2
2
A
356 360Right-handed 310
Helix 3
3
A
361 365Right-handed 310
Helix 4
4
A
410 415Right-handed alpha
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There are 6 sheets in PDB entry 2ODL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
104 105anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
123 128parallel
Strand 4
A
145 149parallel
Strand 5
A
167 170parallel
Strand 6
A
211 215parallel
Strand 7
A
230 235parallel
Strand 8
A
272 277parallel
Strand 9
A
298 310parallel
Strand 10
A
325 335parallel
Strand 11
A
370 373parallel
Strand 12
A
396 399parallel
Strand 13
A
424 427parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
154 156parallel
Strand 3
A
196 199parallel
Strand 4
A
217 220parallel
Strand 5
A
259 262parallel
Strand 6
A
279 282parallel
Strand 7
A
298 310parallel
Strand 8
A
325 335parallel
Strand 9
A
350 353parallel
Strand 10
A
389 393parallel
Strand 11
A
417 421parallel
Strand 12
A
437 439parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
112 117parallel
Strand 4
A
139 142parallel
Strand 5
A
161 163parallel
Strand 6
A
202 204parallel
Strand 7
A
223 225parallel
Strand 8
A
265 267parallel
Strand 9
A
285 287parallel
Strand 10
A
313 315parallel
Strand 11
A
340 342parallel
Strand 12
A
378 380parallel
Strand 13
A
402 404parallel
Strand 14
A
432 434parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
238 241anti-parallel
Strand 3
A
249 253anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 322first strand
Strand 2
A
345 347parallel
Strand 3
A
383 386parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il