Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ODP entry

There is 1 chain in PDB entry 2ODP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 224LEU 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2ODP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 266Right-handed alpha
Helix 2
2
A
290 294Right-handed 310
Helix 3
3
A
295 305Right-handed alpha
Helix 4
4
A
307 312Right-handed 310
Helix 5
5
A
318 338Right-handed alpha
Helix 6
6
A
341 346Right-handed alpha
Helix 7
7
A
365 376Right-handed alpha
Helix 8
8
A
382 384Right-handed 310
Helix 9
9
A
399 407Right-handed alpha
Helix 10
10
A
421 432Right-handed alpha
Helix 11
11
A
453 458Right-handed alpha
Helix 12
12
A
485 489Right-handed 310
Helix 13
13
A
529 533Right-handed 310
Helix 14
14
A
565 572Right-handed alpha
Helix 15
15
A
579 588Right-handed alpha
Helix 16
16
A
612 621Right-handed alpha
Helix 17
17
A
622 625Right-handed 310
Helix 18
18
A
634 638Right-handed 310
Helix 19
19
A
655 659Right-handed 310
Helix 20
20
A
715 724Right-handed alpha
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There are 5 sheets in PDB entry 2ODP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
433 434parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 286first strand
Strand 2
A
271 278anti-parallel
Strand 3
A
232 240parallel
Strand 4
A
347 354parallel
Strand 5
A
386 393parallel
Strand 6
A
416 419parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 513first strand
Strand 2
A
499 502anti-parallel
Strand 3
A
461 465anti-parallel
Strand 4
A
472 476anti-parallel
Strand 5
A
481 484anti-parallel
Strand 6
A
543 547anti-parallel
Strand 7
A
515 520anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 598first strand
Strand 2
A
604 610anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 646first strand
Strand 2
A
707 711anti-parallel
Strand 3
A
670 680anti-parallel
Strand 4
A
662 667anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il