Analysis of interatomic Contacts of Structural Units in PDB entry:
2ODY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ODY entry

There are 6 chains in PDB entry 2ODY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 1ARG 15
B
ILE 16ASP 243
C
PRO 1GLU 14
D
ILE 16ASP 243
E
GLN 16MET 142
F
GLN 16MET 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2ODY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1 1Right-handed alpha
Helix 2
2
A
7 11Right-handed 310
Helix 3
3
A
14 14Right-handed alpha
Helix 4
4
B
55 58Right-handed 310
Helix 5
5
B
60 60Right-handed 310
Helix 6
6
B
125 130Right-handed alpha
Helix 7
7
B
149 151Right-handed 310
Helix 8
8
B
164 171Right-handed alpha
Helix 9
9
B
234 243Right-handed alpha
Helix 10
10
C
1 1Right-handed alpha
Helix 11
11
C
7 11Right-handed 310
Helix 12
12
C
14 14Right-handed alpha
Helix 13
13
D
55 58Right-handed 310
Helix 14
14
D
60 60Right-handed 310
Helix 15
15
D
125 130Right-handed alpha
Helix 16
16
D
149 151Right-handed 310
Helix 17
17
D
164 171Right-handed alpha
Helix 18
18
D
234 243Right-handed alpha
Helix 19
19
E
18 23Right-handed 310
Helix 20
20
E
63 72Right-handed alpha
Helix 21
21
E
84 89Right-handed alpha
Helix 22
22
E
131 140Right-handed alpha
Helix 23
23
F
18 23Right-handed 310
Helix 24
24
F
63 72Right-handed alpha
Helix 25
25
F
84 89Right-handed alpha
Helix 26
26
F
131 139Right-handed alpha
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There are 10 sheets in PDB entry 2ODY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 163anti-parallel
Strand 3
B
180 183anti-parallel
Strand 4
B
226 230anti-parallel
Strand 5
B
207 215anti-parallel
Strand 6
B
198 202anti-parallel
Strand 7
B
135 140anti-parallel
Strand 8
B
156 163anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
81 83first strand
Strand 2
B
64 68anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
39 46anti-parallel
Strand 5
B
51 54anti-parallel
Strand 6
B
104 108anti-parallel
Strand 7
B
85 90anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 60first strand
Strand 2
B
60 60anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
198 202anti-parallel
Strand 5
D
207 215anti-parallel
Strand 6
D
226 230anti-parallel
Strand 7
D
180 183anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
81 83first strand
Strand 2
D
64 68anti-parallel
Strand 3
D
30 35anti-parallel
Strand 4
D
39 46anti-parallel
Strand 5
D
51 54anti-parallel
Strand 6
D
104 108anti-parallel
Strand 7
D
85 90anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
60 60first strand
Strand 2
D
60 60anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
34 40first strand
Strand 2
E
45 51anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
102 108first strand
Strand 2
E
113 119anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
34 40first strand
Strand 2
F
45 51anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
102 107first strand
Strand 2
F
114 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il