Analysis of interatomic Contacts of Structural Units in PDB entry:
2OFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OFJ entry

There are 4 chains in PDB entry 2OFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 320
B
 MET 1LEU 320
C
 MET 1LEU 320
D
 MET 1LEU 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2OFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 72Right-handed alpha
Helix 2
2
A
80 95Right-handed alpha
Helix 3
3
A
138 153Right-handed alpha
Helix 4
4
A
167 176Right-handed alpha
Helix 5
5
A
182 184Right-handed 310
Helix 6
6
A
195 207Right-handed alpha
Helix 7
7
A
235 240Right-handed alpha
Helix 8
8
A
241 255Right-handed alpha
Helix 9
9
A
267 282Right-handed alpha
Helix 10
10
A
291 295Right-handed 310
Helix 11
11
A
312 316Right-handed 310
Helix 12
12
B
55 72Right-handed alpha
Helix 13
13
B
80 95Right-handed alpha
Helix 14
14
B
138 153Right-handed alpha
Helix 15
15
B
167 176Right-handed alpha
Helix 16
16
B
182 184Right-handed 310
Helix 17
17
B
195 207Right-handed alpha
Helix 18
18
B
213 218Right-handed 310
Helix 19
19
B
235 240Right-handed alpha
Helix 20
20
B
241 255Right-handed alpha
Helix 21
21
B
267 282Right-handed alpha
Helix 22
22
B
291 295Right-handed 310
Helix 23
23
B
312 316Right-handed 310
Helix 24
24
C
55 72Right-handed alpha
Helix 25
25
C
80 95Right-handed alpha
Helix 26
26
C
138 153Right-handed alpha
Helix 27
27
C
167 177Right-handed alpha
Helix 28
28
C
179 184Right-handed alpha
Helix 29
29
C
195 207Right-handed alpha
Helix 30
30
C
235 240Right-handed alpha
Helix 31
31
C
241 255Right-handed alpha
Helix 32
32
C
267 282Right-handed alpha
Helix 33
33
C
312 316Right-handed 310
Helix 34
34
D
55 72Right-handed alpha
Helix 35
35
D
80 95Right-handed alpha
Helix 36
36
D
138 153Right-handed alpha
Helix 37
37
D
167 177Right-handed alpha
Helix 38
38
D
179 184Right-handed alpha
Helix 39
39
D
195 207Right-handed alpha
Helix 40
40
D
213 218Right-handed 310
Helix 41
41
D
235 240Right-handed alpha
Helix 42
42
D
241 255Right-handed alpha
Helix 43
43
D
267 282Right-handed alpha
Helix 44
44
D
291 295Right-handed 310
Helix 45
45
D
312 316Right-handed 310
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There are 12 sheets in PDB entry 2OFJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
26 36anti-parallel
Strand 3
A
2 12anti-parallel
Strand 4
A
317 320anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
128 133parallel
Strand 3
A
156 161parallel
Strand 4
A
186 190parallel
Strand 5
A
210 212parallel
Strand 6
A
229 234parallel
Strand 7
A
258 261parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
310 311parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
26 36anti-parallel
Strand 3
B
2 12anti-parallel
Strand 4
B
317 318anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 133first strand
Strand 2
B
156 161parallel
Strand 3
B
186 190parallel
Strand 4
B
210 212parallel
Strand 5
B
229 234parallel
Strand 6
B
258 261parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 299first strand
Strand 2
B
310 311parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 45first strand
Strand 2
C
26 36anti-parallel
Strand 3
C
2 12anti-parallel
Strand 4
C
317 318anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 133first strand
Strand 2
C
156 161parallel
Strand 3
C
186 190parallel
Strand 4
C
210 212parallel
Strand 5
C
229 234parallel
Strand 6
C
258 261parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
298 299first strand
Strand 2
C
310 311parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 44first strand
Strand 2
D
26 36anti-parallel
Strand 3
D
2 12anti-parallel
Strand 4
D
317 320anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 133first strand
Strand 2
D
157 161parallel
Strand 3
D
186 190parallel
Strand 4
D
210 212parallel
Strand 5
D
229 234parallel
Strand 6
D
258 261parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
298 299first strand
Strand 2
D
310 311parallel
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