Analysis of interatomic Contacts of Structural Units in PDB entry:
2OFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OFV entry

There are 2 chains in PDB entry 2OFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 231PHE 498
B
PRO 232THR 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2OFV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
241 243Right-handed 310
Helix 2
2
A
286 295Right-handed alpha
Helix 3
3
A
323 329Right-handed alpha
Helix 4
4
A
330 335Right-handed alpha
Helix 5
5
A
337 358Right-handed alpha
Helix 6
6
A
366 368Right-handed 310
Helix 7
7
A
408 415Right-handed alpha
Helix 8
8
A
418 435Right-handed alpha
Helix 9
9
A
445 454Right-handed alpha
Helix 10
10
A
466 477Right-handed alpha
Helix 11
11
A
480 484Right-handed 310
Helix 12
12
A
486 496Right-handed alpha
Helix 13
13
B
241 243Right-handed 310
Helix 14
14
B
285 295Right-handed alpha
Helix 15
15
B
323 328Right-handed alpha
Helix 16
16
B
337 358Right-handed alpha
Helix 17
17
B
366 368Right-handed 310
Helix 18
18
B
403 407Right-handed 310
Helix 19
19
B
408 415Right-handed alpha
Helix 20
20
B
418 434Right-handed alpha
Helix 21
21
B
466 477Right-handed alpha
Helix 22
22
B
480 484Right-handed 310
Helix 23
23
B
486 496Right-handed alpha
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There are 4 sheets in PDB entry 2OFV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
245 254first strand
Strand 2
A
257 264anti-parallel
Strand 3
A
268 275anti-parallel
Strand 4
A
312 316anti-parallel
Strand 5
A
303 307anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
370 372first strand
Strand 2
A
378 380anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
245 254first strand
Strand 2
B
257 264anti-parallel
Strand 3
B
268 275anti-parallel
Strand 4
B
312 316anti-parallel
Strand 5
B
303 307anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
370 372first strand
Strand 2
B
378 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il