Analysis of interatomic Contacts of Structural Units in PDB entry:
2OG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OG9 entry

There are 2 chains in PDB entry 2OG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 11PRO 385
B
PRO 11PRO 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2OG9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
72 84Right-handed alpha
Helix 2
2
A
85 88Right-handed 310
Helix 3
3
A
94 105Right-handed alpha
Helix 4
4
A
106 110Right-handed 310
Helix 5
5
A
113 134Right-handed alpha
Helix 6
6
A
137 143Right-handed alpha
Helix 7
7
A
162 176Right-handed alpha
Helix 8
8
A
189 205Right-handed alpha
Helix 9
9
A
219 231Right-handed alpha
Helix 10
10
A
232 234Right-handed 310
Helix 11
11
A
246 257Right-handed alpha
Helix 12
12
A
269 279Right-handed alpha
Helix 13
13
A
288 293Right-handed alpha
Helix 14
14
A
294 308Right-handed alpha
Helix 15
15
A
317 327Right-handed alpha
Helix 16
16
A
340 344Right-handed 310
Helix 17
17
A
369 374Right-handed alpha
Helix 18
18
B
72 84Right-handed alpha
Helix 19
19
B
85 88Right-handed 310
Helix 20
20
B
94 106Right-handed alpha
Helix 21
21
B
107 110Right-handed 310
Helix 22
22
B
113 134Right-handed alpha
Helix 23
23
B
137 143Right-handed alpha
Helix 24
24
B
162 176Right-handed alpha
Helix 25
25
B
189 205Right-handed alpha
Helix 26
26
B
219 231Right-handed alpha
Helix 27
27
B
232 234Right-handed 310
Helix 28
28
B
246 257Right-handed alpha
Helix 29
29
B
269 279Right-handed alpha
Helix 30
30
B
288 293Right-handed alpha
Helix 31
31
B
294 308Right-handed alpha
Helix 32
32
B
317 327Right-handed alpha
Helix 33
33
B
340 344Right-handed 310
Helix 34
34
B
369 374Right-handed alpha
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There are 6 sheets in PDB entry 2OG9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 69first strand
Strand 2
A
46 56anti-parallel
Strand 3
A
15 26anti-parallel
Strand 4
A
375 382anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
333 335first strand
Strand 2
A
148 152parallel
Strand 3
A
354 356anti-parallel
Strand 4
A
350 351anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
181 184first strand
Strand 2
A
210 213parallel
Strand 3
A
238 239parallel
Strand 4
A
261 263parallel
Strand 5
A
284 285parallel
Strand 6
A
311 312parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
61 69first strand
Strand 2
B
46 56anti-parallel
Strand 3
B
15 26anti-parallel
Strand 4
B
375 382anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
333 335first strand
Strand 2
B
148 152parallel
Strand 3
B
354 356anti-parallel
Strand 4
B
350 351anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
181 184first strand
Strand 2
B
210 213parallel
Strand 3
B
238 239parallel
Strand 4
B
261 263parallel
Strand 5
B
284 285parallel
Strand 6
B
311 312parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il