Analysis of interatomic Contacts of Structural Units in PDB entry:
2OIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OIB entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 11 chains in PDB entry 2OIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 162GLU 337
A
VAL 343MET 344
A
ARG 347THR 458
B
ARG 164MET 344
B
ARG 347ALA 459
C
SER 161GLN 341
C
VAL 343MET 344
C
ARG 347THR 458
D
ASP 162GLN 341
D
VAL 343MET 344
D
ARG 347ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 2OIB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
169 177Right-handed alpha
Helix 2
2
A
184 188Right-handed 310
Helix 3
3
A
222 240Right-handed alpha
Helix 4
4
A
269 276Right-handed alpha
Helix 5
5
A
277 280Right-handed 310
Helix 6
6
A
284 305Right-handed alpha
Helix 7
7
A
313 315Right-handed 310
Helix 8
8
A
351 355Right-handed 310
Helix 9
9
A
356 361Right-handed alpha
Helix 10
10
A
365 383Right-handed alpha
Helix 11
11
A
395 397Right-handed 310
Helix 12
12
A
398 405Right-handed alpha
Helix 13
13
A
409 414Right-handed alpha
Helix 14
14
A
422 437Right-handed alpha
Helix 15
15
A
440 444Right-handed 310
Helix 16
16
A
446 458Right-handed alpha
Helix 17
17
B
169 177Right-handed alpha
Helix 18
18
B
224 240Right-handed alpha
Helix 19
19
B
269 275Right-handed alpha
Helix 20
20
B
276 280Right-handed 310
Helix 21
21
B
284 305Right-handed alpha
Helix 22
22
B
313 315Right-handed 310
Helix 23
23
B
351 355Right-handed 310
Helix 24
24
B
356 361Right-handed alpha
Helix 25
25
B
366 383Right-handed alpha
Helix 26
26
B
395 397Right-handed 310
Helix 27
27
B
398 405Right-handed alpha
Helix 28
28
B
409 414Right-handed alpha
Helix 29
29
B
422 437Right-handed alpha
Helix 30
30
B
440 444Right-handed 310
Helix 31
31
B
446 459Right-handed alpha
Helix 32
32
C
169 177Right-handed alpha
Helix 33
33
C
224 240Right-handed alpha
Helix 34
34
C
269 275Right-handed alpha
Helix 35
35
C
276 280Right-handed 310
Helix 36
36
C
284 305Right-handed alpha
Helix 37
37
C
313 315Right-handed 310
Helix 38
38
C
351 355Right-handed 310
Helix 39
39
C
356 361Right-handed alpha
Helix 40
40
C
365 383Right-handed alpha
Helix 41
41
C
395 397Right-handed 310
Helix 42
42
C
398 405Right-handed alpha
Helix 43
43
C
409 414Right-handed 310
Helix 44
44
C
422 437Right-handed alpha
Helix 45
45
C
440 444Right-handed 310
Helix 46
46
C
446 458Right-handed alpha
Helix 47
47
D
169 177Right-handed alpha
Helix 48
48
D
223 240Right-handed alpha
Helix 49
49
D
269 275Right-handed alpha
Helix 50
50
D
276 280Right-handed 310
Helix 51
51
D
284 305Right-handed alpha
Helix 52
52
D
313 315Right-handed 310
Helix 53
53
D
351 355Right-handed 310
Helix 54
54
D
356 361Right-handed alpha
Helix 55
55
D
366 383Right-handed alpha
Helix 56
56
D
395 397Right-handed 310
Helix 57
57
D
398 405Right-handed alpha
Helix 58
58
D
409 414Right-handed alpha
Helix 59
59
D
422 437Right-handed alpha
Helix 60
60
D
440 444Right-handed 310
Helix 61
61
D
446 458Right-handed alpha
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There are 14 sheets in PDB entry 2OIB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
166 168first strand
Strand 2
A
248 252parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
208 213anti-parallel
Strand 5
A
200 205anti-parallel
Strand 6
A
191 193anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
208 214anti-parallel
Strand 5
B
199 205anti-parallel
Strand 6
B
191 193anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
166 167first strand
Strand 2
C
248 252parallel
Strand 3
C
258 263anti-parallel
Strand 4
C
208 215anti-parallel
Strand 5
C
199 205anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
317 319first strand
Strand 2
C
325 327anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 344first strand
Strand 2
C
363 364anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
166 167first strand
Strand 2
D
248 252parallel
Strand 3
D
258 263anti-parallel
Strand 4
D
208 215anti-parallel
Strand 5
D
199 205anti-parallel
Strand 6
D
191 193anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
307 308first strand
Strand 2
D
334 335anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
317 319first strand
Strand 2
D
325 327anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
343 344first strand
Strand 2
D
363 364anti-parallel
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