Analysis of interatomic Contacts of Structural Units in PDB entry:
2OM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OM9 entry

There are 4 chains in PDB entry 2OM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 207LEU 476
B
 GLU 207LEU 476
C
 GLU 207LEU 476
D
 GLU 207LEU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 2OM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
207 226Right-handed alpha
Helix 2
2
A
229 238Right-handed alpha
Helix 3
3
A
251 262Right-handed alpha
Helix 4
4
A
270 275Right-handed 310
Helix 5
5
A
276 285Right-handed alpha
Helix 6
6
A
285 301Right-handed alpha
Helix 7
7
A
305 309Right-handed 310
Helix 8
8
A
310 333Right-handed alpha
Helix 9
9
A
350 356Right-handed alpha
Helix 10
10
A
359 363Right-handed 310
Helix 11
11
A
364 376Right-handed alpha
Helix 12
12
A
380 393Right-handed alpha
Helix 13
13
A
402 425Right-handed alpha
Helix 14
14
A
430 460Right-handed alpha
Helix 15
15
A
466 474Right-handed alpha
Helix 16
16
B
207 226Right-handed alpha
Helix 17
17
B
229 238Right-handed alpha
Helix 18
18
B
251 262Right-handed alpha
Helix 19
19
B
276 285Right-handed alpha
Helix 20
20
B
285 303Right-handed alpha
Helix 21
21
B
305 309Right-handed 310
Helix 22
22
B
310 334Right-handed alpha
Helix 23
23
B
350 355Right-handed alpha
Helix 24
24
B
359 363Right-handed 310
Helix 25
25
B
364 376Right-handed alpha
Helix 26
26
B
380 393Right-handed alpha
Helix 27
27
B
403 425Right-handed alpha
Helix 28
28
B
430 460Right-handed alpha
Helix 29
29
B
466 474Right-handed alpha
Helix 30
30
C
207 226Right-handed alpha
Helix 31
31
C
229 238Right-handed alpha
Helix 32
32
C
251 262Right-handed alpha
Helix 33
33
C
270 275Right-handed 310
Helix 34
34
C
276 285Right-handed alpha
Helix 35
35
C
285 302Right-handed alpha
Helix 36
36
C
305 309Right-handed 310
Helix 37
37
C
310 333Right-handed alpha
Helix 38
38
C
350 356Right-handed alpha
Helix 39
39
C
359 363Right-handed 310
Helix 40
40
C
364 376Right-handed alpha
Helix 41
41
C
380 393Right-handed alpha
Helix 42
42
C
402 425Right-handed alpha
Helix 43
43
C
430 460Right-handed alpha
Helix 44
44
C
466 474Right-handed alpha
Helix 45
45
D
207 226Right-handed alpha
Helix 46
46
D
229 238Right-handed alpha
Helix 47
47
D
251 262Right-handed alpha
Helix 48
48
D
276 285Right-handed alpha
Helix 49
49
D
285 303Right-handed alpha
Helix 50
50
D
305 309Right-handed 310
Helix 51
51
D
310 334Right-handed alpha
Helix 52
52
D
350 355Right-handed alpha
Helix 53
53
D
359 363Right-handed 310
Helix 54
54
D
364 377Right-handed alpha
Helix 55
55
D
380 393Right-handed alpha
Helix 56
56
D
403 425Right-handed alpha
Helix 57
57
D
430 460Right-handed alpha
Helix 58
58
D
466 474Right-handed alpha
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There are 4 sheets in PDB entry 2OM9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
346 349parallel
Strand 3
A
338 341anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
346 349parallel
Strand 3
B
338 341anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 249first strand
Strand 2
C
346 349parallel
Strand 3
C
338 341anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 249first strand
Strand 2
D
346 349parallel
Strand 3
D
338 341anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il