Analysis of interatomic Contacts of Structural Units in PDB entry:
2OMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OMU entry

There are 2 chains in PDB entry 2OMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 36ALA 497
B
GLY -3GLN 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2OMU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
44 48Right-handed alpha
Helix 2
2
A
50 61Right-handed alpha
Helix 3
3
A
71 76Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
135 139Right-handed 310
Helix 7
7
A
157 161Right-handed 310
Helix 8
8
A
179 183Right-handed 310
Helix 9
9
A
201 205Right-handed 310
Helix 10
10
A
223 229Right-handed 310
Helix 11
11
A
245 251Right-handed 310
Helix 12
12
A
267 273Right-handed 310
Helix 13
13
A
289 293Right-handed 310
Helix 14
14
A
311 315Right-handed 310
Helix 15
15
A
333 339Right-handed 310
Helix 16
16
A
355 359Right-handed 310
Helix 17
17
A
377 383Right-handed 310
Helix 18
18
A
399 403Right-handed 310
Helix 19
19
A
450 452Right-handed 310
Helix 20
20
B
28 31Right-handed 310
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There are 8 sheets in PDB entry 2OMU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 43first strand
Strand 2
A
69 70anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
80 82first strand
Strand 2
A
102 104parallel
Strand 3
A
124 126parallel
Strand 4
A
146 148parallel
Strand 5
A
168 170parallel
Strand 6
A
190 192parallel
Strand 7
A
212 214parallel
Strand 8
A
234 236parallel
Strand 9
A
256 258parallel
Strand 10
A
278 280parallel
Strand 11
A
300 302parallel
Strand 12
A
322 324parallel
Strand 13
A
344 346parallel
Strand 14
A
366 368parallel
Strand 15
A
388 390parallel
Strand 16
A
410 412parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
416 419first strand
Strand 2
A
483 496parallel
Strand 3
A
423 424parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
416 419first strand
Strand 2
A
483 496parallel
Strand 3
A
469 480anti-parallel
Strand 4
A
447 448anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
428 432first strand
Strand 2
A
458 462anti-parallel
Strand 3
A
453 455anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 3first strand
Strand 2
B
25 26anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
7 10first strand
Strand 2
B
92 99parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
35 40anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
19 23first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
51 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il