Analysis of interatomic Contacts of Structural Units in PDB entry:
2OMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OMZ entry

There are 2 chains in PDB entry 2OMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 32GLY 497
B
GLY -3GLN 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2OMZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
44 48Right-handed alpha
Helix 2
2
A
50 61Right-handed alpha
Helix 3
3
A
71 76Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
135 139Right-handed 310
Helix 7
7
A
157 161Right-handed 310
Helix 8
8
A
179 183Right-handed 310
Helix 9
9
A
200 204Right-handed 310
Helix 10
10
A
222 228Right-handed 310
Helix 11
11
A
244 250Right-handed 310
Helix 12
12
A
266 272Right-handed 310
Helix 13
13
A
288 292Right-handed 310
Helix 14
14
A
310 314Right-handed 310
Helix 15
15
A
332 338Right-handed 310
Helix 16
16
A
354 360Right-handed 310
Helix 17
17
A
376 382Right-handed 310
Helix 18
18
A
398 402Right-handed 310
Helix 19
19
B
28 31Right-handed 310
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There are 8 sheets in PDB entry 2OMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 43first strand
Strand 2
A
69 70anti-parallel
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There are 16 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
80 82first strand
Strand 2
A
102 104parallel
Strand 3
A
124 126parallel
Strand 4
A
146 148parallel
Strand 5
A
168 176parallel
Strand 6
A
190 195parallel
Strand 7
A
211 213parallel
Strand 8
A
233 235parallel
Strand 9
A
255 257parallel
Strand 10
A
277 279parallel
Strand 11
A
299 301parallel
Strand 12
A
321 323parallel
Strand 13
A
343 345parallel
Strand 14
A
365 367parallel
Strand 15
A
387 389parallel
Strand 16
A
409 411parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
415 418first strand
Strand 2
A
482 495parallel
Strand 3
A
422 423parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
415 418first strand
Strand 2
A
482 495parallel
Strand 3
A
468 479anti-parallel
Strand 4
A
446 447anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
429 431first strand
Strand 2
A
457 459anti-parallel
Strand 3
A
452 454anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 3first strand
Strand 2
B
25 26anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 10first strand
Strand 2
B
92 99parallel
Strand 3
B
73 81anti-parallel
Strand 4
B
35 40anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
19 23first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
51 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il