Analysis of interatomic Contacts of Structural Units in PDB entry:
2ONL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ONL entry

There are 4 chains in PDB entry 2ONL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 4PRO 352
C
PHE 46LEU 393
B
GLU 4PRO 352
D
PHE 46LEU 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2ONL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
61 78Right-handed alpha
Helix 2
2
A
113 120Right-handed alpha
Helix 3
3
A
123 144Right-handed alpha
Helix 4
4
A
152 154Right-handed 310
Helix 5
5
A
190 195Right-handed alpha
Helix 6
6
A
203 219Right-handed alpha
Helix 7
7
A
227 240Right-handed alpha
Helix 8
8
A
243 250Right-handed alpha
Helix 9
9
A
252 261Right-handed alpha
Helix 10
10
A
269 274Right-handed alpha
Helix 11
11
A
278 289Right-handed alpha
Helix 12
12
A
292 296Right-handed 310
Helix 13
13
A
298 305Right-handed alpha
Helix 14
14
A
306 309Right-handed 310
Helix 15
15
A
325 330Right-handed 310
Helix 16
16
A
333 348Right-handed alpha
Helix 17
17
C
58 61Right-handed 310
Helix 18
18
C
98 110Right-handed alpha
Helix 19
19
C
146 152Right-handed alpha
Helix 20
20
C
159 180Right-handed alpha
Helix 21
21
C
188 191Right-handed 310
Helix 22
22
C
241 244Right-handed 310
Helix 23
23
C
245 258Right-handed alpha
Helix 24
24
C
299 306Right-handed alpha
Helix 25
25
C
315 321Right-handed alpha
Helix 26
26
C
322 327Right-handed alpha
Helix 27
27
C
337 344Right-handed alpha
Helix 28
28
C
347 362Right-handed alpha
Helix 29
29
C
380 392Right-handed alpha
Helix 30
30
B
61 78Right-handed alpha
Helix 31
31
B
113 120Right-handed alpha
Helix 32
32
B
123 144Right-handed alpha
Helix 33
33
B
152 154Right-handed 310
Helix 34
34
B
190 195Right-handed alpha
Helix 35
35
B
203 219Right-handed alpha
Helix 36
36
B
227 240Right-handed alpha
Helix 37
37
B
243 249Right-handed alpha
Helix 38
38
B
252 261Right-handed alpha
Helix 39
39
B
269 274Right-handed alpha
Helix 40
40
B
278 289Right-handed alpha
Helix 41
41
B
292 296Right-handed 310
Helix 42
42
B
298 305Right-handed alpha
Helix 43
43
B
306 309Right-handed 310
Helix 44
44
B
324 330Right-handed 310
Helix 45
45
B
333 348Right-handed alpha
Helix 46
46
D
98 110Right-handed alpha
Helix 47
47
D
146 152Right-handed alpha
Helix 48
48
D
159 180Right-handed alpha
Helix 49
49
D
188 190Right-handed 310
Helix 50
50
D
238 258Right-handed alpha
Helix 51
51
D
298 305Right-handed alpha
Helix 52
52
D
315 321Right-handed alpha
Helix 53
53
D
322 327Right-handed alpha
Helix 54
54
D
337 345Right-handed alpha
Helix 55
55
D
345 361Right-handed alpha
Helix 56
56
D
374 378Right-handed 310
Helix 57
57
D
380 390Right-handed alpha
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There are 12 sheets in PDB entry 2ONL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 12first strand
Strand 2
A
17 21anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 33first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
102 107anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
111 112first strand
Strand 2
A
156 158anti-parallel
Strand 3
A
164 166anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
63 64first strand
Strand 2
C
79 83anti-parallel
Strand 3
C
90 92anti-parallel
Strand 4
C
133 139anti-parallel
Strand 5
C
120 126anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
144 145first strand
Strand 2
C
193 194anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
182 183first strand
Strand 2
C
212 213anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
8 12first strand
Strand 2
B
17 21anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 31first strand
Strand 2
B
37 43anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
102 107anti-parallel
Strand 5
B
88 90anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
111 112first strand
Strand 2
B
156 158anti-parallel
Strand 3
B
164 166anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
79 81first strand
Strand 2
D
90 96anti-parallel
Strand 3
D
131 139anti-parallel
Strand 4
D
120 128anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
144 145first strand
Strand 2
D
192 194anti-parallel
Strand 3
D
203 205anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
182 183first strand
Strand 2
D
212 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il