Analysis of interatomic Contacts of Structural Units in PDB entry:
2OOL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OOL entry

There are 2 chains in PDB entry 2OOL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 26ILE 333
B
 GLU 27GLU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2OOL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 31Right-handed 310
Helix 2
2
A
61 67Right-handed alpha
Helix 3
3
A
69 74Right-handed 310
Helix 4
4
A
77 82Right-handed 310
Helix 5
5
A
83 95Right-handed alpha
Helix 6
6
A
141 158Right-handed alpha
Helix 7
7
A
161 178Right-handed alpha
Helix 8
8
A
213 217Right-handed 310
Helix 9
9
A
218 228Right-handed alpha
Helix 10
10
A
266 277Right-handed alpha
Helix 11
11
A
307 333Right-handed alpha
Helix 12
12
B
27 31Right-handed 310
Helix 13
13
B
61 67Right-handed alpha
Helix 14
14
B
69 74Right-handed alpha
Helix 15
15
B
77 82Right-handed 310
Helix 16
16
B
83 94Right-handed alpha
Helix 17
17
B
143 157Right-handed alpha
Helix 18
18
B
161 178Right-handed alpha
Helix 19
19
B
218 228Right-handed alpha
Helix 20
20
B
266 277Right-handed alpha
Helix 21
21
B
307 330Right-handed alpha
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There are 4 sheets in PDB entry 2OOL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
241 244anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
44 48anti-parallel
Strand 5
A
128 134anti-parallel
Strand 6
A
114 125anti-parallel
Strand 7
A
105 111anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
181 187anti-parallel
Strand 4
A
291 300anti-parallel
Strand 5
A
280 288anti-parallel
Strand 6
A
230 233anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
241 244anti-parallel
Strand 3
B
55 59anti-parallel
Strand 4
B
44 49anti-parallel
Strand 5
B
128 134anti-parallel
Strand 6
B
114 125anti-parallel
Strand 7
B
105 111anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 212first strand
Strand 2
B
193 200anti-parallel
Strand 3
B
181 187anti-parallel
Strand 4
B
291 300anti-parallel
Strand 5
B
280 288anti-parallel
Strand 6
B
230 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il