Analysis of interatomic Contacts of Structural Units in PDB entry:
2OPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OPJ entry

There is 1 chain in PDB entry 2OPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2OPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 60Right-handed alpha
Helix 2
2
A
80 92Right-handed alpha
Helix 3
3
A
109 122Right-handed alpha
Helix 4
4
A
136 148Right-handed alpha
Helix 5
5
A
161 172Right-handed alpha
Helix 6
6
A
203 208Right-handed alpha
Helix 7
7
A
209 220Right-handed alpha
Helix 8
8
A
232 246Right-handed alpha
Helix 9
9
A
256 261Right-handed 310
Helix 10
10
A
285 292Right-handed alpha
Helix 11
11
A
296 312Right-handed alpha
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There are 3 sheets in PDB entry 2OPJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
19 28anti-parallel
Strand 3
A
5 16anti-parallel
Strand 4
A
293 294anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
276 278anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
95 99parallel
Strand 3
A
126 130parallel
Strand 4
A
152 156parallel
Strand 5
A
176 178parallel
Strand 6
A
199 202parallel
Strand 7
A
224 226parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il