Analysis of interatomic Contacts of Structural Units in PDB entry:
2ORY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2ORY entry

There are 2 chains in PDB entry 2ORY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 340
B
 TYR 3HIS 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2ORY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 16Right-handed alpha
Helix 2
2
A
29 44Right-handed alpha
Helix 3
3
A
45 48Right-handed 310
Helix 4
4
A
96 101Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
127 139Right-handed alpha
Helix 7
7
A
151 161Right-handed alpha
Helix 8
8
A
174 190Right-handed alpha
Helix 9
9
A
213 225Right-handed alpha
Helix 10
10
A
226 228Right-handed 310
Helix 11
11
A
237 241Right-handed 310
Helix 12
12
A
243 248Right-handed alpha
Helix 13
13
A
264 279Right-handed alpha
Helix 14
14
A
303 314Right-handed alpha
Helix 15
15
A
314 320Right-handed alpha
Helix 16
16
A
327 333Right-handed alpha
Helix 17
17
A
334 337Right-handed 310
Helix 18
18
B
4 16Right-handed alpha
Helix 19
19
B
25 28Right-handed 310
Helix 20
20
B
29 44Right-handed alpha
Helix 21
21
B
45 50Right-handed 310
Helix 22
22
B
96 101Right-handed alpha
Helix 23
23
B
104 108Right-handed 310
Helix 24
24
B
127 139Right-handed alpha
Helix 25
25
B
151 161Right-handed alpha
Helix 26
26
B
174 191Right-handed alpha
Helix 27
27
B
213 225Right-handed alpha
Helix 28
28
B
226 228Right-handed 310
Helix 29
29
B
237 241Right-handed 310
Helix 30
30
B
243 248Right-handed alpha
Helix 31
31
B
264 279Right-handed alpha
Helix 32
32
B
303 314Right-handed alpha
Helix 33
33
B
314 320Right-handed alpha
Helix 34
34
B
327 340Right-handed alpha
Helix 35
35
B
341 346Right-handed alpha
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There are 4 sheets in PDB entry 2ORY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 63first strand
Strand 2
A
66 78anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
166 173parallel
Strand 5
A
199 206parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 112first strand
Strand 2
A
124 126anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 61first strand
Strand 2
B
71 79anti-parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
166 173parallel
Strand 5
B
199 206parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
124 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il