Analysis of interatomic Contacts of Structural Units in PDB entry:
2OT7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OT7 entry

There are 6 chains in PDB entry 2OT7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7LYS 355
B
 THR 7LEU 354
C
 ALA 7ARG 8
C
 SER 10GLY 13
D
 ALA 7ARG 8
D
 SER 10GLY 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 2OT7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
26 37Right-handed alpha
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
61 64Right-handed 310
Helix 5
5
A
94 102Right-handed alpha
Helix 6
6
A
113 125Right-handed alpha
Helix 7
7
A
155 157Right-handed 310
Helix 8
8
A
158 165Right-handed alpha
Helix 9
9
A
190 194Right-handed 310
Helix 10
10
A
212 214Right-handed 310
Helix 11
11
A
215 227Right-handed alpha
Helix 12
12
A
227 234Right-handed alpha
Helix 13
13
A
236 241Right-handed 310
Helix 14
14
A
246 253Right-handed alpha
Helix 15
15
A
295 303Right-handed alpha
Helix 16
16
A
317 325Right-handed alpha
Helix 17
17
A
328 334Right-handed alpha
Helix 18
18
A
347 349Right-handed 310
Helix 19
19
A
350 355Right-handed alpha
Helix 20
20
B
20 25Right-handed alpha
Helix 21
21
B
26 37Right-handed alpha
Helix 22
22
B
38 42Right-handed 310
Helix 23
23
B
94 102Right-handed alpha
Helix 24
24
B
113 125Right-handed alpha
Helix 25
25
B
155 157Right-handed 310
Helix 26
26
B
158 163Right-handed alpha
Helix 27
27
B
190 194Right-handed 310
Helix 28
28
B
212 214Right-handed 310
Helix 29
29
B
215 227Right-handed alpha
Helix 30
30
B
227 234Right-handed alpha
Helix 31
31
B
236 241Right-handed 310
Helix 32
32
B
246 253Right-handed alpha
Helix 33
33
B
295 303Right-handed alpha
Helix 34
34
B
317 325Right-handed alpha
Helix 35
35
B
328 335Right-handed alpha
Helix 36
36
B
347 353Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 2OT7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
44 47parallel
Strand 3
A
267 270anti-parallel
Strand 4
A
195 203anti-parallel
Strand 5
A
284 291anti-parallel
Strand 6
A
175 179anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
71 78anti-parallel
Strand 9
A
81 88anti-parallel
Strand 10
A
243 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
92 93anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
276 280anti-parallel
Strand 3
A
206 210anti-parallel
Strand 4
A
258 262anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
44 47parallel
Strand 3
B
267 270anti-parallel
Strand 4
B
195 203anti-parallel
Strand 5
B
284 291anti-parallel
Strand 6
B
175 179anti-parallel
Strand 7
B
131 137anti-parallel
Strand 8
B
71 78anti-parallel
Strand 9
B
81 88anti-parallel
Strand 10
B
243 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
92 93anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 188first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
258 262anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il