Analysis of interatomic Contacts of Structural Units in PDB entry:
2OZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OZB entry

There are 6 chains in PDB entry 2OZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
A 20 U 52
F
A 20 U 52
A
GLU 3VAL 128
B
GLU 85GLU 333
D
ALA 4VAL 128
E
GLU 85GLU 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 2OZB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 32Right-handed alpha
Helix 2
2
A
38 49Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
67 77Right-handed alpha
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
112 125Right-handed alpha
Helix 7
7
B
88 119Right-handed alpha
Helix 8
8
B
124 129Right-handed alpha
Helix 9
9
B
131 143Right-handed alpha
Helix 10
10
B
145 149Right-handed 310
Helix 11
11
B
154 158Right-handed 310
Helix 12
12
B
160 173Right-handed alpha
Helix 13
13
B
180 216Right-handed alpha
Helix 14
14
B
216 236Right-handed alpha
Helix 15
15
B
237 243Right-handed alpha
Helix 16
16
B
245 250Right-handed alpha
Helix 17
17
B
277 282Right-handed alpha
Helix 18
18
B
284 286Right-handed 310
Helix 19
19
B
287 308Right-handed alpha
Helix 20
20
B
314 332Right-handed alpha
Helix 21
21
D
15 32Right-handed alpha
Helix 22
22
D
38 48Right-handed alpha
Helix 23
23
D
62 66Right-handed 310
Helix 24
24
D
67 77Right-handed alpha
Helix 25
25
D
85 93Right-handed alpha
Helix 26
26
D
112 127Right-handed alpha
Helix 27
27
E
88 119Right-handed alpha
Helix 28
28
E
124 129Right-handed alpha
Helix 29
29
E
131 143Right-handed alpha
Helix 30
30
E
154 159Right-handed alpha
Helix 31
31
E
160 172Right-handed alpha
Helix 32
32
E
180 216Right-handed alpha
Helix 33
33
E
216 236Right-handed alpha
Helix 34
34
E
237 242Right-handed alpha
Helix 35
35
E
245 250Right-handed alpha
Helix 36
36
E
277 282Right-handed alpha
Helix 37
37
E
283 286Right-handed 310
Helix 38
38
E
287 308Right-handed alpha
Helix 39
39
E
314 332Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2OZB. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 37first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
51 57anti-parallel
Strand 4
A
80 83parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
35 37first strand
Strand 2
D
101 105anti-parallel
Strand 3
D
51 57anti-parallel
Strand 4
D
80 83parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il