Analysis of interatomic Contacts of Structural Units in PDB entry:
2P5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P5V entry

There are 8 chains in PDB entry 2P5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 3LEU 158
B
GLN 3LEU 158
C
THR 5LEU 158
D
GLN 3LEU 158
E
GLN 3LEU 158
F
THR 5LEU 158
G
MSE 1LEU 158
H
THR 5LEU 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2P5V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
7 20Right-handed alpha
Helix 2
2
A
24 33Right-handed alpha
Helix 3
3
A
35 49Right-handed alpha
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
81 91Right-handed alpha
Helix 6
6
A
116 127Right-handed alpha
Helix 7
7
A
154 158Right-handed 310
Helix 8
8
B
7 20Right-handed alpha
Helix 9
9
B
24 33Right-handed alpha
Helix 10
10
B
35 49Right-handed alpha
Helix 11
11
B
61 65Right-handed 310
Helix 12
12
B
81 92Right-handed alpha
Helix 13
13
B
116 127Right-handed alpha
Helix 14
14
B
154 158Right-handed 310
Helix 15
15
C
7 20Right-handed alpha
Helix 16
16
C
24 32Right-handed alpha
Helix 17
17
C
35 49Right-handed alpha
Helix 18
18
C
61 65Right-handed 310
Helix 19
19
C
81 91Right-handed alpha
Helix 20
20
C
116 127Right-handed alpha
Helix 21
21
C
154 158Right-handed 310
Helix 22
22
D
7 20Right-handed alpha
Helix 23
23
D
24 33Right-handed alpha
Helix 24
24
D
35 49Right-handed alpha
Helix 25
25
D
61 65Right-handed 310
Helix 26
26
D
81 92Right-handed alpha
Helix 27
27
D
116 127Right-handed alpha
Helix 28
28
D
154 158Right-handed 310
Helix 29
29
E
7 20Right-handed alpha
Helix 30
30
E
24 32Right-handed alpha
Helix 31
31
E
35 49Right-handed alpha
Helix 32
32
E
61 65Right-handed 310
Helix 33
33
E
81 91Right-handed alpha
Helix 34
34
E
116 127Right-handed alpha
Helix 35
35
E
154 158Right-handed 310
Helix 36
36
F
7 20Right-handed alpha
Helix 37
37
F
24 33Right-handed alpha
Helix 38
38
F
35 49Right-handed alpha
Helix 39
39
F
61 65Right-handed 310
Helix 40
40
F
81 92Right-handed alpha
Helix 41
41
F
116 127Right-handed alpha
Helix 42
42
F
154 158Right-handed 310
Helix 43
43
G
1 6Right-handed alpha
Helix 44
44
G
7 20Right-handed alpha
Helix 45
45
G
24 32Right-handed alpha
Helix 46
46
G
35 49Right-handed alpha
Helix 47
47
G
61 65Right-handed 310
Helix 48
48
G
81 93Right-handed alpha
Helix 49
49
G
116 127Right-handed alpha
Helix 50
50
G
154 158Right-handed 310
Helix 51
51
H
7 20Right-handed alpha
Helix 52
52
H
24 32Right-handed alpha
Helix 53
53
H
35 49Right-handed alpha
Helix 54
54
H
61 65Right-handed 310
Helix 55
55
H
81 91Right-handed alpha
Helix 56
56
H
116 127Right-handed alpha
Helix 57
57
H
154 158Right-handed 310
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There are 8 sheets in PDB entry 2P5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
52 59first strand
Strand 2
B
52 59anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 76first strand
Strand 2
A
108 114anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
B
134 148anti-parallel
Strand 5
B
68 76anti-parallel
Strand 6
B
108 114anti-parallel
Strand 7
B
96 102anti-parallel
Strand 8
A
134 148anti-parallel
Strand 9
A
68 76anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
52 59first strand
Strand 2
D
52 59anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
68 76first strand
Strand 2
C
108 114anti-parallel
Strand 3
C
96 102anti-parallel
Strand 4
D
134 148anti-parallel
Strand 5
D
68 76anti-parallel
Strand 6
D
108 114anti-parallel
Strand 7
D
96 102anti-parallel
Strand 8
C
134 148anti-parallel
Strand 9
C
68 76anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
52 59first strand
Strand 2
F
52 59anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
68 76first strand
Strand 2
E
108 114anti-parallel
Strand 3
E
96 102anti-parallel
Strand 4
F
134 148anti-parallel
Strand 5
F
68 76anti-parallel
Strand 6
F
108 114anti-parallel
Strand 7
F
96 102anti-parallel
Strand 8
E
134 148anti-parallel
Strand 9
E
68 76anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
52 59first strand
Strand 2
H
52 59anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
68 76first strand
Strand 2
G
108 114anti-parallel
Strand 3
G
96 102anti-parallel
Strand 4
H
134 148anti-parallel
Strand 5
H
68 76anti-parallel
Strand 6
H
108 114anti-parallel
Strand 7
H
96 102anti-parallel
Strand 8
G
134 148anti-parallel
Strand 9
G
68 76anti-parallel
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