Analysis of interatomic Contacts of Structural Units in PDB entry:
2P83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2P83 entry

There are 3 chains in PDB entry 2P83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 61	ASN 385
B	SER 61	ILE 386
C	SER 61	ILE 386

There are 37 helices in PDB entry 2P83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	62	3	Right-handed 310
Helix 2	2	A	53	57	Right-handed 310
Helix 3	3	A	123	127	Right-handed 310
Helix 4	4	A	135	144	Right-handed alpha
Helix 5	5	A	180	182	Right-handed 310
Helix 6	6	A	216	221	Right-handed alpha
Helix 7	7	A	238	252	Right-handed alpha
Helix 8	8	A	258	263	Right-handed alpha
Helix 9	9	A	276	280	Right-handed 310
Helix 10	10	A	301	305	Right-handed alpha
Helix 11	11	A	334	339	Right-handed alpha
Helix 12	12	A	378	383	Right-handed 310
Helix 13	13	B	62	3	Right-handed 310
Helix 14	14	B	53	57	Right-handed 310
Helix 15	15	B	123	127	Right-handed 310
Helix 16	16	B	135	144	Right-handed alpha
Helix 17	17	B	180	182	Right-handed 310
Helix 18	18	B	216	221	Right-handed alpha
Helix 19	19	B	238	252	Right-handed alpha
Helix 20	20	B	253	255	Right-handed 310
Helix 21	21	B	258	263	Right-handed alpha
Helix 22	22	B	276	280	Right-handed 310
Helix 23	23	B	301	305	Right-handed alpha
Helix 24	24	B	334	339	Right-handed alpha
Helix 25	25	B	378	383	Right-handed 310
Helix 26	26	C	11	13	Right-handed 310
Helix 27	27	C	53	57	Right-handed 310
Helix 28	28	C	123	127	Right-handed 310
Helix 29	29	C	135	144	Right-handed alpha
Helix 30	30	C	180	182	Right-handed 310
Helix 31	31	C	216	221	Right-handed alpha
Helix 32	32	C	238	253	Right-handed alpha
Helix 33	33	C	258	263	Right-handed alpha
Helix 34	34	C	276	280	Right-handed 310
Helix 35	35	C	301	305	Right-handed alpha
Helix 36	36	C	334	339	Right-handed alpha
Helix 37	37	C	378	383	Right-handed alpha

There are 15 sheets in PDB entry 2P83. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	70	first strand
Strand 2	A	75	86	anti-parallel
Strand 3	A	15	20	anti-parallel
Strand 4	A	6	8	anti-parallel
Strand 5	A	170	176	anti-parallel
Strand 6	A	150	155	anti-parallel
Strand 7	A	341	346	anti-parallel
Strand 8	A	351	357	anti-parallel
Strand 9	A	184	192	anti-parallel

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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	70	first strand
Strand 2	A	75	86	anti-parallel
Strand 3	A	94	106	anti-parallel
Strand 4	A	38	41	parallel
Strand 5	A	117	120	anti-parallel
Strand 6	A	25	32	parallel
Strand 7	A	15	20	anti-parallel
Strand 8	A	6	8	anti-parallel
Strand 9	A	170	176	anti-parallel
Strand 10	A	150	155	anti-parallel
Strand 11	A	341	346	anti-parallel
Strand 12	A	351	357	anti-parallel
Strand 13	A	184	192	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	283	288	anti-parallel
Strand 4	A	294	300	anti-parallel
Strand 5	A	369	375	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	331	333	parallel
Strand 3	A	234	237	anti-parallel
Strand 4	A	324	327	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	318	322	anti-parallel
Strand 3	A	306	308	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	70	first strand
Strand 2	B	75	86	anti-parallel
Strand 3	B	14	20	anti-parallel
Strand 4	B	6	9	anti-parallel
Strand 5	B	169	176	anti-parallel
Strand 6	B	150	154	anti-parallel
Strand 7	B	341	346	anti-parallel
Strand 8	B	351	357	anti-parallel
Strand 9	B	184	192	anti-parallel

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There are 13 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	70	first strand
Strand 2	B	75	86	anti-parallel
Strand 3	B	94	106	anti-parallel
Strand 4	B	38	41	parallel
Strand 5	B	117	120	anti-parallel
Strand 6	B	25	32	parallel
Strand 7	B	14	20	anti-parallel
Strand 8	B	6	9	anti-parallel
Strand 9	B	169	176	anti-parallel
Strand 10	B	150	154	anti-parallel
Strand 11	B	341	346	anti-parallel
Strand 12	B	351	357	anti-parallel
Strand 13	B	184	192	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	283	288	anti-parallel
Strand 4	B	294	300	anti-parallel
Strand 5	B	369	375	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	227	first strand
Strand 2	B	331	333	parallel
Strand 3	B	234	237	anti-parallel
Strand 4	B	324	327	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	319	322	anti-parallel
Strand 3	B	306	308	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	70	first strand
Strand 2	C	75	86	anti-parallel
Strand 3	C	15	20	anti-parallel
Strand 4	C	6	9	anti-parallel
Strand 5	C	169	176	anti-parallel
Strand 6	C	150	155	anti-parallel
Strand 7	C	341	346	anti-parallel
Strand 8	C	351	357	anti-parallel
Strand 9	C	184	192	anti-parallel

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There are 13 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	70	first strand
Strand 2	C	75	86	anti-parallel
Strand 3	C	94	106	anti-parallel
Strand 4	C	38	41	parallel
Strand 5	C	117	120	anti-parallel
Strand 6	C	25	32	parallel
Strand 7	C	15	20	anti-parallel
Strand 8	C	6	9	anti-parallel
Strand 9	C	169	176	anti-parallel
Strand 10	C	150	155	anti-parallel
Strand 11	C	341	346	anti-parallel
Strand 12	C	351	357	anti-parallel
Strand 13	C	184	192	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	203	208	anti-parallel
Strand 3	C	283	287	anti-parallel
Strand 4	C	295	300	anti-parallel
Strand 5	C	369	374	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	227	first strand
Strand 2	C	331	333	parallel
Strand 3	C	234	237	anti-parallel
Strand 4	C	324	327	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	270	first strand
Strand 2	C	318	322	anti-parallel
Strand 3	C	306	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2P83

Analysis of interatomic Contacts of Structural Units in PDB entry:
2P83