Analysis of interatomic Contacts of Structural Units in PDB entry:
2P8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P8U entry

There are 4 chains in PDB entry 2P8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9ALA 128
A
 TYR 130PRO 470
B
 ASN 9ALA 128
B
 TYR 130PRO 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 2P8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 16Right-handed alpha
Helix 2
2
A
33 41Right-handed alpha
Helix 3
3
A
64 80Right-handed alpha
Helix 4
4
A
83 85Right-handed 310
Helix 5
5
A
103 109Right-handed alpha
Helix 6
6
A
110 112Right-handed 310
Helix 7
7
A
127 129Right-handed 310
Helix 8
8
A
130 144Right-handed alpha
Helix 9
9
A
168 172Right-handed 310
Helix 10
10
A
217 248Right-handed alpha
Helix 11
11
A
254 258Right-handed 310
Helix 12
12
A
267 286Right-handed alpha
Helix 13
13
A
288 296Right-handed 310
Helix 14
14
A
298 302Right-handed 310
Helix 15
15
A
305 309Right-handed 310
Helix 16
16
A
312 323Right-handed alpha
Helix 17
17
A
323 331Right-handed alpha
Helix 18
18
A
332 334Right-handed 310
Helix 19
19
A
335 342Right-handed alpha
Helix 20
20
A
344 346Right-handed 310
Helix 21
21
A
347 360Right-handed alpha
Helix 22
22
A
361 366Right-handed alpha
Helix 23
23
A
396 404Right-handed alpha
Helix 24
24
A
407 414Right-handed alpha
Helix 25
25
A
419 434Right-handed alpha
Helix 26
26
B
10 16Right-handed alpha
Helix 27
27
B
33 41Right-handed alpha
Helix 28
28
B
64 80Right-handed alpha
Helix 29
29
B
83 85Right-handed 310
Helix 30
30
B
103 109Right-handed alpha
Helix 31
31
B
110 112Right-handed 310
Helix 32
32
B
127 129Right-handed 310
Helix 33
33
B
130 145Right-handed alpha
Helix 34
34
B
168 172Right-handed 310
Helix 35
35
B
217 247Right-handed alpha
Helix 36
36
B
254 258Right-handed 310
Helix 37
37
B
267 286Right-handed alpha
Helix 38
38
B
288 296Right-handed 310
Helix 39
39
B
298 302Right-handed 310
Helix 40
40
B
305 309Right-handed 310
Helix 41
41
B
312 323Right-handed alpha
Helix 42
42
B
323 331Right-handed alpha
Helix 43
43
B
332 334Right-handed 310
Helix 44
44
B
335 342Right-handed alpha
Helix 45
45
B
344 346Right-handed 310
Helix 46
46
B
347 360Right-handed alpha
Helix 47
47
B
361 366Right-handed alpha
Helix 48
48
B
396 404Right-handed alpha
Helix 49
49
B
407 414Right-handed alpha
Helix 50
50
B
419 434Right-handed alpha
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There are 8 sheets in PDB entry 2P8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
380 388anti-parallel
Strand 3
A
187 189anti-parallel
Strand 4
A
18 25anti-parallel
Strand 5
A
173 182anti-parallel
Strand 6
A
152 161anti-parallel
Strand 7
A
87 93parallel
Strand 8
A
124 126parallel
Strand 9
B
124 126anti-parallel
Strand 10
B
87 93parallel
Strand 11
B
152 161parallel
Strand 12
B
173 182anti-parallel
Strand 13
B
18 25anti-parallel
Strand 14
B
187 189anti-parallel
Strand 15
B
380 388anti-parallel
Strand 16
B
195 198anti-parallel
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There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
369 376parallel
Strand 3
A
380 388anti-parallel
Strand 4
A
187 189anti-parallel
Strand 5
A
18 25anti-parallel
Strand 6
A
173 182anti-parallel
Strand 7
A
152 161anti-parallel
Strand 8
A
87 93parallel
Strand 9
A
124 126parallel
Strand 10
B
124 126anti-parallel
Strand 11
B
87 93parallel
Strand 12
B
152 161parallel
Strand 13
B
173 182anti-parallel
Strand 14
B
18 25anti-parallel
Strand 15
B
187 189anti-parallel
Strand 16
B
380 388anti-parallel
Strand 17
B
369 376anti-parallel
Strand 18
B
260 263parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
416 417parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 458first strand
Strand 2
A
464 468anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
29 32anti-parallel
Strand 3
B
416 417parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
215 216anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 458first strand
Strand 2
B
464 468anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il