Analysis of interatomic Contacts of Structural Units in PDB entry:
2PBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PBF entry

There are 2 chains in PDB entry 2PBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ASN 227
B
 GLU 9ASN 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 2PBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
27 36Right-handed alpha
Helix 3
3
A
37 42Right-handed 310
Helix 4
4
A
63 75Right-handed alpha
Helix 5
5
A
92 102Right-handed alpha
Helix 6
6
A
118 133Right-handed alpha
Helix 7
7
A
134 138Right-handed 310
Helix 8
8
A
148 152Right-handed 310
Helix 9
9
A
153 161Right-handed alpha
Helix 10
10
A
176 182Right-handed alpha
Helix 11
11
B
11 22Right-handed alpha
Helix 12
12
B
27 36Right-handed alpha
Helix 13
13
B
37 42Right-handed 310
Helix 14
14
B
63 75Right-handed alpha
Helix 15
15
B
92 102Right-handed alpha
Helix 16
16
B
118 133Right-handed alpha
Helix 17
17
B
134 139Right-handed 310
Helix 18
18
B
148 152Right-handed 310
Helix 19
19
B
153 161Right-handed alpha
Helix 20
20
B
176 182Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2PBF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
111 116parallel
Strand 3
A
83 87parallel
Strand 4
A
163 168parallel
Strand 5
A
183 195parallel
Strand 6
A
198 205anti-parallel
Strand 7
A
212 219anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
111 116parallel
Strand 3
B
83 87parallel
Strand 4
B
163 168parallel
Strand 5
B
183 195parallel
Strand 6
B
198 205anti-parallel
Strand 7
B
212 219anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il