Analysis of interatomic Contacts of Structural Units in PDB entry:
2PCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PCU entry

There are 2 chains in PDB entry 2PCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5LEU 308
B
 PHE 1VAL 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2PCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 29Right-handed alpha
Helix 2
2
A
72 90Right-handed alpha
Helix 3
3
A
93 103Right-handed alpha
Helix 4
4
A
112 122Right-handed alpha
Helix 5
5
A
142 146Right-handed 310
Helix 6
6
A
173 187Right-handed alpha
Helix 7
7
A
215 232Right-handed alpha
Helix 8
8
A
243 247Right-handed alpha
Helix 9
9
A
253 261Right-handed alpha
Helix 10
10
A
282 284Right-handed 310
Helix 11
11
A
285 307Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2PCU.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
104 108anti-parallel
Strand 4
A
61 66parallel
Strand 5
A
189 196parallel
Strand 6
A
265 270parallel
Strand 7
A
201 204anti-parallel
Strand 8
A
239 242parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il