Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PGD entry

There is 1 chain in PDB entry 2PGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2PGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
12 23Right-handed alpha
Helix 2
B
A
36 43Right-handed alpha
Helix 3
C
A
57 63Right-handed alpha
Helix 4
D
A
78 90Right-handed alpha
Helix 5
E
A
105 117Right-handed alpha
Helix 6
F
A
130 136Right-handed alpha
Helix 7
G
A
149 159Right-handed alpha
Helix 8
H
A
178 206Right-handed alpha
Helix 9
I
A
212 222Right-handed alpha
Helix 10
J
A
230 240Right-handed alpha
Helix 11
K
A
262 273Right-handed alpha
Helix 12
L
A
278 291Right-handed alpha
Helix 13
M
A
293 302Right-handed alpha
Helix 14
N
A
315 348Right-handed alpha
Helix 15
O
A
354 360Right-handed alpha
Helix 16
P
A
371 381Right-handed alpha
Helix 17
Q
A
392 415Right-handed alpha
Helix 18
R
A
420 433Right-handed alpha
Helix 19
S
A
439 450Right-handed alpha
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There is 1 sheet (COE) in PDB entry 2PGD.

There are 8 strands in COE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
28 31parallel
Strand 3
A
5 8parallel
Strand 4
A
69 72parallel
Strand 5
A
96 99parallel
Strand 6
A
121 128parallel
Strand 7
A
139 144anti-parallel
Strand 8
A
174 175parallel
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