Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PGE entry

There is 1 chain in PDB entry 2PGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3VAL 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2PGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 60Right-handed 310
Helix 2
2
A
61 76Right-handed alpha
Helix 3
3
A
78 88Right-handed alpha
Helix 4
4
A
95 110Right-handed alpha
Helix 5
5
A
118 135Right-handed alpha
Helix 6
6
A
162 176Right-handed alpha
Helix 7
7
A
189 204Right-handed alpha
Helix 8
8
A
223 233Right-handed alpha
Helix 9
9
A
247 258Right-handed alpha
Helix 10
10
A
265 269Right-handed 310
Helix 11
11
A
273 284Right-handed alpha
Helix 12
12
A
291 296Right-handed alpha
Helix 13
13
A
297 311Right-handed alpha
Helix 14
14
A
323 336Right-handed alpha
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There are 4 sheets in PDB entry 2PGE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
32 39anti-parallel
Strand 3
A
42 49anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
29 30anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
365 367anti-parallel
Strand 3
A
360 361anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
180 184parallel
Strand 3
A
210 214parallel
Strand 4
A
238 240parallel
Strand 5
A
262 264parallel
Strand 6
A
287 290parallel
Strand 7
A
314 317parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il