Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2PGW entry

There are 8 chains in PDB entry 2PGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	ALA 374
B	VAL 4	SER 375
C	VAL 4	GLY 378
D	VAL 4	SER 375
E	VAL 4	SER 375
F	VAL 4	SER 375
G	VAL 4	SER 375
H	VAL 4	SER 375

There are137 helices in PDB entry 2PGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	56	69	Right-handed alpha
Helix 2	2	A	70	72	Right-handed 310
Helix 3	3	A	75	77	Right-handed 310
Helix 4	4	A	78	91	Right-handed alpha
Helix 5	5	A	92	95	Right-handed 310
Helix 6	6	A	98	122	Right-handed alpha
Helix 7	7	A	124	128	Right-handed 310
Helix 8	8	A	147	161	Right-handed alpha
Helix 9	9	A	173	186	Right-handed alpha
Helix 10	10	A	202	214	Right-handed alpha
Helix 11	11	A	215	217	Right-handed 310
Helix 12	12	A	229	240	Right-handed alpha
Helix 13	13	A	252	262	Right-handed alpha
Helix 14	14	A	271	276	Right-handed alpha
Helix 15	15	A	277	291	Right-handed alpha
Helix 16	16	A	303	317	Right-handed alpha
Helix 17	17	A	327	331	Right-handed 310
Helix 18	18	A	361	374	Right-handed alpha
Helix 19	19	B	56	70	Right-handed alpha
Helix 20	20	B	75	77	Right-handed 310
Helix 21	21	B	78	91	Right-handed alpha
Helix 22	22	B	92	95	Right-handed 310
Helix 23	23	B	98	122	Right-handed alpha
Helix 24	24	B	124	128	Right-handed 310
Helix 25	25	B	147	161	Right-handed alpha
Helix 26	26	B	173	186	Right-handed alpha
Helix 27	27	B	202	214	Right-handed alpha
Helix 28	28	B	215	217	Right-handed 310
Helix 29	29	B	229	240	Right-handed alpha
Helix 30	30	B	252	262	Right-handed alpha
Helix 31	31	B	271	276	Right-handed alpha
Helix 32	32	B	277	291	Right-handed alpha
Helix 33	33	B	303	317	Right-handed alpha
Helix 34	34	B	327	331	Right-handed 310
Helix 35	35	B	361	375	Right-handed alpha
Helix 36	36	C	56	70	Right-handed alpha
Helix 37	37	C	75	77	Right-handed 310
Helix 38	38	C	78	91	Right-handed alpha
Helix 39	39	C	92	95	Right-handed 310
Helix 40	40	C	98	122	Right-handed alpha
Helix 41	41	C	124	129	Right-handed 310
Helix 42	42	C	147	161	Right-handed alpha
Helix 43	43	C	173	186	Right-handed alpha
Helix 44	44	C	202	214	Right-handed alpha
Helix 45	45	C	215	217	Right-handed 310
Helix 46	46	C	229	240	Right-handed alpha
Helix 47	47	C	252	262	Right-handed alpha
Helix 48	48	C	271	276	Right-handed alpha
Helix 49	49	C	277	291	Right-handed alpha
Helix 50	50	C	303	317	Right-handed alpha
Helix 51	51	C	327	331	Right-handed 310
Helix 52	52	C	361	376	Right-handed alpha
Helix 53	53	D	56	70	Right-handed alpha
Helix 54	54	D	75	77	Right-handed 310
Helix 55	55	D	78	91	Right-handed alpha
Helix 56	56	D	92	95	Right-handed 310
Helix 57	57	D	98	122	Right-handed alpha
Helix 58	58	D	124	129	Right-handed 310
Helix 59	59	D	147	161	Right-handed alpha
Helix 60	60	D	173	188	Right-handed alpha
Helix 61	61	D	202	214	Right-handed alpha
Helix 62	62	D	215	217	Right-handed 310
Helix 63	63	D	229	240	Right-handed alpha
Helix 64	64	D	252	262	Right-handed alpha
Helix 65	65	D	271	276	Right-handed alpha
Helix 66	66	D	277	291	Right-handed alpha
Helix 67	67	D	303	317	Right-handed alpha
Helix 68	68	D	327	331	Right-handed 310
Helix 69	69	D	361	375	Right-handed alpha
Helix 70	70	E	56	70	Right-handed alpha
Helix 71	71	E	75	77	Right-handed 310
Helix 72	72	E	78	91	Right-handed alpha
Helix 73	73	E	92	95	Right-handed 310
Helix 74	74	E	98	122	Right-handed alpha
Helix 75	75	E	124	129	Right-handed 310
Helix 76	76	E	147	162	Right-handed alpha
Helix 77	77	E	173	186	Right-handed alpha
Helix 78	78	E	202	214	Right-handed alpha
Helix 79	79	E	215	217	Right-handed 310
Helix 80	80	E	229	240	Right-handed alpha
Helix 81	81	E	252	263	Right-handed alpha
Helix 82	82	E	271	276	Right-handed alpha
Helix 83	83	E	277	291	Right-handed alpha
Helix 84	84	E	303	317	Right-handed alpha
Helix 85	85	E	327	331	Right-handed 310
Helix 86	86	E	361	375	Right-handed alpha
Helix 87	87	F	56	69	Right-handed alpha
Helix 88	88	F	70	72	Right-handed 310
Helix 89	89	F	75	77	Right-handed 310
Helix 90	90	F	78	91	Right-handed alpha
Helix 91	91	F	92	95	Right-handed 310
Helix 92	92	F	98	122	Right-handed alpha
Helix 93	93	F	124	128	Right-handed 310
Helix 94	94	F	147	161	Right-handed alpha
Helix 95	95	F	173	186	Right-handed alpha
Helix 96	96	F	202	214	Right-handed alpha
Helix 97	97	F	215	217	Right-handed 310
Helix 98	98	F	229	240	Right-handed alpha
Helix 99	99	F	252	262	Right-handed alpha
Helix 100	100	F	271	276	Right-handed alpha
Helix 101	101	F	277	291	Right-handed alpha
Helix 102	102	F	303	317	Right-handed alpha
Helix 103	103	F	327	331	Right-handed 310
Helix 104	104	F	361	375	Right-handed alpha
Helix 105	105	G	56	70	Right-handed alpha
Helix 106	106	G	75	77	Right-handed 310
Helix 107	107	G	78	91	Right-handed alpha
Helix 108	108	G	92	95	Right-handed 310
Helix 109	109	G	98	122	Right-handed alpha
Helix 110	110	G	124	128	Right-handed 310
Helix 111	111	G	147	161	Right-handed alpha
Helix 112	112	G	173	186	Right-handed alpha
Helix 113	113	G	202	214	Right-handed alpha
Helix 114	114	G	215	217	Right-handed 310
Helix 115	115	G	229	240	Right-handed alpha
Helix 116	116	G	252	262	Right-handed alpha
Helix 117	117	G	271	276	Right-handed alpha
Helix 118	118	G	277	291	Right-handed alpha
Helix 119	119	G	303	317	Right-handed alpha
Helix 120	120	G	327	331	Right-handed 310
Helix 121	121	G	361	375	Right-handed alpha
Helix 122	122	H	56	70	Right-handed alpha
Helix 123	123	H	75	77	Right-handed 310
Helix 124	124	H	78	91	Right-handed alpha
Helix 125	125	H	92	95	Right-handed 310
Helix 126	126	H	98	122	Right-handed alpha
Helix 127	127	H	124	128	Right-handed 310
Helix 128	128	H	147	161	Right-handed alpha
Helix 129	129	H	173	188	Right-handed alpha
Helix 130	130	H	202	214	Right-handed alpha
Helix 131	131	H	229	240	Right-handed alpha
Helix 132	132	H	252	262	Right-handed alpha
Helix 133	133	H	271	276	Right-handed alpha
Helix 134	134	H	277	291	Right-handed alpha
Helix 135	135	H	303	317	Right-handed alpha
Helix 136	136	H	327	331	Right-handed 310
Helix 137	137	H	361	375	Right-handed alpha

There are 32 sheets in PDB entry 2PGW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	23	first strand
Strand 2	A	28	41	anti-parallel
Strand 3	A	46	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	138	first strand
Strand 2	A	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	165	169	parallel
Strand 3	A	192	196	parallel
Strand 4	A	220	222	parallel
Strand 5	A	244	246	parallel
Strand 6	A	267	270	parallel
Strand 7	A	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	24	first strand
Strand 2	B	27	41	anti-parallel
Strand 3	B	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	138	first strand
Strand 2	B	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	165	169	parallel
Strand 3	B	192	196	parallel
Strand 4	B	220	222	parallel
Strand 5	B	244	246	parallel
Strand 6	B	267	270	parallel
Strand 7	B	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	23	first strand
Strand 2	C	28	41	anti-parallel
Strand 3	C	46	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	138	first strand
Strand 2	C	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	165	169	parallel
Strand 3	C	192	196	parallel
Strand 4	C	220	222	parallel
Strand 5	C	244	246	parallel
Strand 6	C	267	270	parallel
Strand 7	C	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	338	first strand
Strand 2	C	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	24	first strand
Strand 2	D	27	41	anti-parallel
Strand 3	D	46	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	138	first strand
Strand 2	D	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	165	169	parallel
Strand 3	D	192	196	parallel
Strand 4	D	220	222	parallel
Strand 5	D	244	246	parallel
Strand 6	D	267	270	parallel
Strand 7	D	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	338	first strand
Strand 2	D	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	24	first strand
Strand 2	E	27	40	anti-parallel
Strand 3	E	46	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	138	first strand
Strand 2	E	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	165	169	parallel
Strand 3	E	192	196	parallel
Strand 4	E	220	222	parallel
Strand 5	E	244	246	parallel
Strand 6	E	267	270	parallel
Strand 7	E	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	338	first strand
Strand 2	E	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	24	first strand
Strand 2	F	27	41	anti-parallel
Strand 3	F	46	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	138	first strand
Strand 2	F	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	165	169	parallel
Strand 3	F	192	196	parallel
Strand 4	F	220	222	parallel
Strand 5	F	244	246	parallel
Strand 6	F	267	270	parallel
Strand 7	F	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	338	first strand
Strand 2	F	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	24	first strand
Strand 2	G	27	41	anti-parallel
Strand 3	G	46	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	138	first strand
Strand 2	G	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	142	first strand
Strand 2	G	165	169	parallel
Strand 3	G	192	196	parallel
Strand 4	G	220	222	parallel
Strand 5	G	244	246	parallel
Strand 6	G	267	270	parallel
Strand 7	G	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	336	338	first strand
Strand 2	G	359	360	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	24	first strand
Strand 2	H	27	41	anti-parallel
Strand 3	H	46	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	138	first strand
Strand 2	H	347	349	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	141	142	first strand
Strand 2	H	165	169	parallel
Strand 3	H	192	196	parallel
Strand 4	H	218	222	parallel
Strand 5	H	244	246	parallel
Strand 6	H	267	270	parallel
Strand 7	H	295	297	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	336	338	first strand
Strand 2	H	359	360	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2PGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGW