Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PGY entry

There is 1 chain in PDB entry 2PGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 63PRO 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2PGY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
101 112Right-handed alpha
Helix 2
2
A
123 128Right-handed 310
Helix 3
3
A
129 141Right-handed alpha
Helix 4
4
A
155 159Right-handed 310
Helix 5
5
A
188 194Right-handed alpha
Helix 6
6
A
196 204Right-handed alpha
Helix 7
7
A
221 225Right-handed 310
Helix 8
8
A
240 244Right-handed 310
Helix 9
9
A
274 294Right-handed alpha
Helix 10
10
A
301 313Right-handed alpha
Helix 11
11
A
321 324Right-handed 310
Helix 12
12
A
326 331Right-handed alpha
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There are 2 sheets in PDB entry 2PGY. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
94 95first strand
Strand 2
A
317 319parallel
Strand 3
A
228 231parallel
Strand 4
A
269 273anti-parallel
Strand 5
A
206 210anti-parallel
Strand 6
A
115 122parallel
Strand 7
A
146 153parallel
Strand 8
A
168 174parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
214 216first strand
Strand 2
A
341 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il