Analysis of interatomic Contacts of Structural Units in PDB entry:
2PJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PJH entry

There are 2 chains in PDB entry 2PJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 77
B
 ASN 21LEU 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2PJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 37Right-handed alpha
Helix 2
2
A
51 56Right-handed 310
Helix 3
3
B
42 49Right-handed alpha
Helix 4
4
B
85 92Right-handed alpha
Helix 5
5
B
120 123Right-handed 310
Helix 6
6
B
202 206Right-handed 310
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There are 4 sheets in PDB entry 2PJH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
8 10parallel
Strand 3
A
14 17anti-parallel
Strand 4
B
108 109anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
81 84parallel
Strand 3
B
38 41anti-parallel
Strand 4
B
66 73parallel
Strand 5
B
56 60anti-parallel
Strand 6
B
99 104anti-parallel
Strand 7
B
25 29anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
161 168anti-parallel
Strand 3
B
114 118anti-parallel
Strand 4
B
182 183parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
173 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il