Analysis of interatomic Contacts of Structural Units in PDB entry:
2POD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2POD entry

There are 2 chains in PDB entry 2POD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0THR 397
B
 SER 0ASP 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2POD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 48Right-handed alpha
Helix 2
2
A
49 54Right-handed alpha
Helix 3
3
A
60 68Right-handed alpha
Helix 4
4
A
78 100Right-handed alpha
Helix 5
5
A
102 107Right-handed alpha
Helix 6
6
A
149 157Right-handed alpha
Helix 7
7
A
157 169Right-handed alpha
Helix 8
8
A
178 186Right-handed 310
Helix 9
9
A
191 199Right-handed alpha
Helix 10
10
A
199 209Right-handed alpha
Helix 11
11
A
210 213Right-handed 310
Helix 12
12
A
224 236Right-handed alpha
Helix 13
13
A
237 239Right-handed 310
Helix 14
14
A
251 253Right-handed 310
Helix 15
15
A
254 261Right-handed alpha
Helix 16
16
A
273 284Right-handed alpha
Helix 17
17
A
298 313Right-handed alpha
Helix 18
18
A
324 338Right-handed alpha
Helix 19
19
A
347 352Right-handed alpha
Helix 20
20
A
385 390Right-handed alpha
Helix 21
21
B
37 48Right-handed alpha
Helix 22
22
B
48 54Right-handed alpha
Helix 23
23
B
60 68Right-handed alpha
Helix 24
24
B
78 100Right-handed alpha
Helix 25
25
B
102 107Right-handed alpha
Helix 26
26
B
149 157Right-handed alpha
Helix 27
27
B
157 169Right-handed alpha
Helix 28
28
B
178 183Right-handed alpha
Helix 29
29
B
191 199Right-handed alpha
Helix 30
30
B
199 209Right-handed alpha
Helix 31
31
B
210 213Right-handed 310
Helix 32
32
B
224 236Right-handed alpha
Helix 33
33
B
237 239Right-handed 310
Helix 34
34
B
251 253Right-handed 310
Helix 35
35
B
254 262Right-handed alpha
Helix 36
36
B
273 284Right-handed alpha
Helix 37
37
B
298 313Right-handed alpha
Helix 38
38
B
324 338Right-handed alpha
Helix 39
39
B
347 352Right-handed alpha
Helix 40
40
B
385 390Right-handed alpha
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There are 6 sheets in PDB entry 2POD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 35first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
3 11anti-parallel
Strand 4
A
392 397anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
287 292parallel
Strand 3
A
266 268parallel
Strand 4
A
242 244parallel
Strand 5
A
214 218parallel
Strand 6
A
172 175parallel
Strand 7
A
115 120parallel
Strand 8
A
344 346parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
287 292parallel
Strand 3
A
266 268parallel
Strand 4
A
242 244parallel
Strand 5
A
214 218parallel
Strand 6
A
172 175parallel
Strand 7
A
115 120parallel
Strand 8
A
369 371anti-parallel
Strand 9
A
364 366anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 35first strand
Strand 2
B
17 24anti-parallel
Strand 3
B
3 11anti-parallel
Strand 4
B
392 398anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
287 292parallel
Strand 3
B
266 268parallel
Strand 4
B
242 244parallel
Strand 5
B
214 218parallel
Strand 6
B
172 175parallel
Strand 7
B
115 120parallel
Strand 8
B
344 346parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
287 292parallel
Strand 3
B
266 268parallel
Strand 4
B
242 244parallel
Strand 5
B
214 218parallel
Strand 6
B
172 175parallel
Strand 7
B
115 120parallel
Strand 8
B
369 371anti-parallel
Strand 9
B
364 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il