Analysis of interatomic Contacts of Structural Units in PDB entry:
2PUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PUY entry

There are 3 chains in PDB entry 2PUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 485ILE 543
B
 HIS 484ILE 543
E
 ALA 1SER 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2PUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
511 515Right-handed 310
Helix 2
2
A
529 539Right-handed alpha
Helix 3
3
B
511 515Right-handed 310
Helix 4
4
B
529 543Right-handed alpha
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There are 2 sheets in PDB entry 2PUY. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
509 510anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
509 510first strand
Strand 2
B
498 502anti-parallel
Strand 3
E
3 6anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il