Analysis of interatomic Contacts of Structural Units in PDB entry:
2PVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PVF entry

There are 4 chains in PDB entry 2PVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 467GLU 585
A
 SER 587ASP 655
A
 LYS 658THR 765
B
 GLU 604LEU 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2PVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
477 479Right-handed 310
Helix 2
2
A
524 542Right-handed alpha
Helix 3
3
A
571 578Right-handed alpha
Helix 4
4
A
599 620Right-handed alpha
Helix 5
5
A
628 630Right-handed 310
Helix 6
6
A
666 670Right-handed 310
Helix 7
7
A
671 678Right-handed alpha
Helix 8
8
A
681 698Right-handed alpha
Helix 9
9
A
708 719Right-handed alpha
Helix 10
10
A
729 740Right-handed alpha
Helix 11
11
A
743 747Right-handed 310
Helix 12
12
A
749 765Right-handed alpha
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There are 4 sheets in PDB entry 2PVF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 489first strand
Strand 2
A
494 500anti-parallel
Strand 3
A
513 518anti-parallel
Strand 4
A
561 565anti-parallel
Strand 5
A
550 554anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
649 650anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 634first strand
Strand 2
A
640 642anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 658first strand
Strand 2
A
679 680anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il