Analysis of interatomic Contacts of Structural Units in PDB entry:
2PZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PZF entry

There are 2 chains in PDB entry 2PZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 386GLY 646
B
 THR 388LEU 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2PZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
463 472Right-handed alpha
Helix 2
2
A
502 509Right-handed alpha
Helix 3
3
A
513 524Right-handed alpha
Helix 4
4
A
526 533Right-handed alpha
Helix 5
5
A
535 538Right-handed 310
Helix 6
6
A
549 564Right-handed alpha
Helix 7
7
A
579 590Right-handed alpha
Helix 8
8
A
606 612Right-handed alpha
Helix 9
9
A
629 635Right-handed alpha
Helix 10
10
A
639 645Right-handed alpha
Helix 11
11
B
463 472Right-handed alpha
Helix 12
12
B
502 509Right-handed alpha
Helix 13
13
B
513 524Right-handed alpha
Helix 14
14
B
526 531Right-handed alpha
Helix 15
15
B
535 538Right-handed 310
Helix 16
16
B
549 564Right-handed alpha
Helix 17
17
B
579 590Right-handed alpha
Helix 18
18
B
606 613Right-handed alpha
Helix 19
19
B
629 636Right-handed alpha
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There are 6 sheets in PDB entry 2PZF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 449first strand
Strand 2
A
390 399anti-parallel
Strand 3
A
479 484anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
568 572parallel
Strand 3
A
599 603parallel
Strand 4
A
453 457parallel
Strand 5
A
615 620parallel
Strand 6
A
623 628anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
540 541anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 449first strand
Strand 2
B
390 399anti-parallel
Strand 3
B
479 484anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 491first strand
Strand 2
B
568 572parallel
Strand 3
B
600 603parallel
Strand 4
B
453 457parallel
Strand 5
B
615 620parallel
Strand 6
B
623 628anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 501first strand
Strand 2
B
540 541anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il