Analysis of interatomic Contacts of Structural Units in PDB entry:
2PZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PZI entry

There are 2 chains in PDB entry 2PZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 69PRO 746
B
GLY 69ARG 745
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2PZI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
87 92Right-handed alpha
Helix 2
2
A
99 103Right-handed 310
Helix 3
3
A
172 174Right-handed 310
Helix 4
4
A
188 200Right-handed alpha
Helix 5
5
A
201 205Right-handed 310
Helix 6
6
A
249 270Right-handed alpha
Helix 7
7
A
278 280Right-handed 310
Helix 8
8
A
316 321Right-handed alpha
Helix 9
9
A
323 340Right-handed alpha
Helix 10
10
A
357 363Right-handed alpha
Helix 11
11
A
363 374Right-handed alpha
Helix 12
12
A
377 381Right-handed 310
Helix 13
13
A
384 405Right-handed alpha
Helix 14
14
A
425 430Right-handed alpha
Helix 15
15
A
432 437Right-handed alpha
Helix 16
16
A
445 453Right-handed alpha
Helix 17
17
A
464 471Right-handed alpha
Helix 18
18
A
475 488Right-handed alpha
Helix 19
19
A
502 516Right-handed alpha
Helix 20
20
A
517 533Right-handed alpha
Helix 21
21
A
535 550Right-handed alpha
Helix 22
22
A
551 566Right-handed alpha
Helix 23
23
A
570 584Right-handed alpha
Helix 24
24
A
590 599Right-handed alpha
Helix 25
25
A
602 616Right-handed alpha
Helix 26
26
A
618 628Right-handed alpha
Helix 27
27
A
635 647Right-handed alpha
Helix 28
28
A
657 670Right-handed alpha
Helix 29
29
A
677 694Right-handed alpha
Helix 30
30
A
709 728Right-handed alpha
Helix 31
31
A
730 745Right-handed alpha
Helix 32
32
B
87 92Right-handed 310
Helix 33
33
B
99 103Right-handed 310
Helix 34
34
B
188 200Right-handed alpha
Helix 35
35
B
201 205Right-handed 310
Helix 36
36
B
249 270Right-handed alpha
Helix 37
37
B
278 280Right-handed 310
Helix 38
38
B
316 321Right-handed alpha
Helix 39
39
B
323 340Right-handed alpha
Helix 40
40
B
357 363Right-handed alpha
Helix 41
41
B
363 374Right-handed alpha
Helix 42
42
B
377 381Right-handed 310
Helix 43
43
B
384 405Right-handed alpha
Helix 44
44
B
445 453Right-handed alpha
Helix 45
45
B
464 471Right-handed alpha
Helix 46
46
B
475 488Right-handed alpha
Helix 47
47
B
497 501Right-handed 310
Helix 48
48
B
502 515Right-handed alpha
Helix 49
49
B
517 533Right-handed alpha
Helix 50
50
B
535 550Right-handed alpha
Helix 51
51
B
551 566Right-handed alpha
Helix 52
52
B
570 584Right-handed alpha
Helix 53
53
B
590 599Right-handed alpha
Helix 54
54
B
602 616Right-handed alpha
Helix 55
55
B
618 628Right-handed alpha
Helix 56
56
B
635 649Right-handed alpha
Helix 57
57
B
657 670Right-handed alpha
Helix 58
58
B
675 693Right-handed alpha
Helix 59
59
B
709 723Right-handed alpha
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There are 14 sheets in PDB entry 2PZI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 73first strand
Strand 2
A
78 81anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
125 127first strand
Strand 2
A
134 136anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 147first strand
Strand 2
A
151 160anti-parallel
Strand 3
A
163 170anti-parallel
Strand 4
A
177 182anti-parallel
Strand 5
A
226 233anti-parallel
Strand 6
A
213 220anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 239first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
289 291anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
272 273first strand
Strand 2
A
298 299anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
344 345first strand
Strand 2
A
348 349anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
702 703first strand
Strand 2
A
706 707anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
70 73first strand
Strand 2
B
78 81anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
125 127first strand
Strand 2
B
134 136anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 147first strand
Strand 2
B
151 160anti-parallel
Strand 3
B
163 170anti-parallel
Strand 4
B
177 182anti-parallel
Strand 5
B
226 233anti-parallel
Strand 6
B
213 220anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
238 239first strand
Strand 2
B
282 284anti-parallel
Strand 3
B
289 291anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
272 273first strand
Strand 2
B
298 299anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
344 345first strand
Strand 2
B
348 349anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
702 703first strand
Strand 2
B
706 707anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il