Analysis of interatomic Contacts of Structural Units in PDB entry:
2Q8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2Q8D entry

There are 4 chains in PDB entry 2Q8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 347
B
 ASN 9PRO 346
F
 GLY 33VAL 35
G
 THR 32VAL 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2Q8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
26 36Right-handed alpha
Helix 4
4
A
38 42Right-handed 310
Helix 5
5
A
94 103Right-handed alpha
Helix 6
6
A
113 125Right-handed alpha
Helix 7
7
A
155 157Right-handed 310
Helix 8
8
A
158 165Right-handed alpha
Helix 9
9
A
190 194Right-handed 310
Helix 10
10
A
212 214Right-handed 310
Helix 11
11
A
215 227Right-handed alpha
Helix 12
12
A
227 234Right-handed alpha
Helix 13
13
A
236 241Right-handed 310
Helix 14
14
A
246 253Right-handed alpha
Helix 15
15
A
295 303Right-handed alpha
Helix 16
16
A
317 325Right-handed alpha
Helix 17
17
A
328 334Right-handed alpha
Helix 18
18
B
9 13Right-handed 310
Helix 19
19
B
20 25Right-handed alpha
Helix 20
20
B
26 37Right-handed alpha
Helix 21
21
B
38 42Right-handed 310
Helix 22
22
B
94 103Right-handed alpha
Helix 23
23
B
113 125Right-handed alpha
Helix 24
24
B
155 157Right-handed 310
Helix 25
25
B
158 163Right-handed alpha
Helix 26
26
B
190 194Right-handed 310
Helix 27
27
B
212 214Right-handed 310
Helix 28
28
B
215 227Right-handed alpha
Helix 29
29
B
227 234Right-handed alpha
Helix 30
30
B
236 241Right-handed 310
Helix 31
31
B
246 253Right-handed alpha
Helix 32
32
B
295 303Right-handed alpha
Helix 33
33
B
317 325Right-handed alpha
Helix 34
34
B
328 335Right-handed alpha
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There are 6 sheets in PDB entry 2Q8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
44 47parallel
Strand 3
A
267 270anti-parallel
Strand 4
A
195 203anti-parallel
Strand 5
A
284 291anti-parallel
Strand 6
A
175 179anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
71 78anti-parallel
Strand 9
A
81 88anti-parallel
Strand 10
A
243 245anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
92 93anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
258 262anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
44 47parallel
Strand 3
B
267 270anti-parallel
Strand 4
B
195 203anti-parallel
Strand 5
B
284 291anti-parallel
Strand 6
B
175 179anti-parallel
Strand 7
B
131 137anti-parallel
Strand 8
B
71 78anti-parallel
Strand 9
B
81 88anti-parallel
Strand 10
B
243 245anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
92 93anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 188first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
206 211anti-parallel
Strand 4
B
258 262anti-parallel
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