Analysis of interatomic Contacts of Structural Units in PDB entry:
2QC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QC1 entry

There are 2 chains in PDB entry 2QC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 1GLY 74
B
LYS 0PRO 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2QC1. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
32 37Right-handed alpha
Helix 2
2
B
1 13Right-handed alpha
Helix 3
3
B
68 73Right-handed 310
Helix 4
4
B
81 85Right-handed 310
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There are 4 sheets in PDB entry 2QC1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 5first strand
Strand 2
A
12 15anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
56 60first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
B
176 190anti-parallel
Strand 5
B
198 209anti-parallel
Strand 6
B
139 148anti-parallel
Strand 7
B
121 130anti-parallel
Strand 8
B
49 61anti-parallel
Strand 9
B
29 44anti-parallel
Strand 10
B
156 160parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
90 92first strand
Strand 2
B
139 148anti-parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
49 61anti-parallel
Strand 5
B
29 44anti-parallel
Strand 6
B
156 160parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 103first strand
Strand 2
B
121 130anti-parallel
Strand 3
B
49 61anti-parallel
Strand 4
B
115 118anti-parallel
Strand 5
B
108 111anti-parallel
Strand 6
B
77 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il