Analysis of interatomic Contacts of Structural Units in PDB entry:
2QFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QFV entry

There are 4 chains in PDB entry 2QFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2SER 411
B
 LYS 4SER 411
C
 SER 3LYS 410
D
 PHE 2SER 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 2QFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
46 54Right-handed alpha
Helix 3
3
A
55 69Right-handed alpha
Helix 4
4
A
80 88Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
138 142Right-handed 310
Helix 7
7
A
188 206Right-handed alpha
Helix 8
8
A
220 237Right-handed alpha
Helix 9
9
A
237 245Right-handed alpha
Helix 10
10
A
253 263Right-handed alpha
Helix 11
11
A
273 288Right-handed alpha
Helix 12
12
A
289 291Right-handed 310
Helix 13
13
A
314 323Right-handed alpha
Helix 14
14
A
331 349Right-handed alpha
Helix 15
15
A
351 371Right-handed alpha
Helix 16
16
A
376 383Right-handed alpha
Helix 17
17
A
393 410Right-handed alpha
Helix 18
18
B
17 32Right-handed alpha
Helix 19
19
B
46 53Right-handed alpha
Helix 20
20
B
55 69Right-handed alpha
Helix 21
21
B
80 88Right-handed alpha
Helix 22
22
B
95 105Right-handed alpha
Helix 23
23
B
138 142Right-handed 310
Helix 24
24
B
188 206Right-handed alpha
Helix 25
25
B
220 237Right-handed alpha
Helix 26
26
B
237 245Right-handed alpha
Helix 27
27
B
253 263Right-handed alpha
Helix 28
28
B
272 288Right-handed alpha
Helix 29
29
B
289 291Right-handed 310
Helix 30
30
B
314 323Right-handed alpha
Helix 31
31
B
331 350Right-handed alpha
Helix 32
32
B
351 371Right-handed alpha
Helix 33
33
B
376 383Right-handed alpha
Helix 34
34
B
387 391Right-handed 310
Helix 35
35
B
393 410Right-handed alpha
Helix 36
36
C
18 32Right-handed alpha
Helix 37
37
C
46 52Right-handed alpha
Helix 38
38
C
55 69Right-handed alpha
Helix 39
39
C
80 88Right-handed alpha
Helix 40
40
C
95 105Right-handed alpha
Helix 41
41
C
138 142Right-handed 310
Helix 42
42
C
188 206Right-handed alpha
Helix 43
43
C
220 237Right-handed alpha
Helix 44
44
C
237 245Right-handed alpha
Helix 45
45
C
253 263Right-handed alpha
Helix 46
46
C
272 288Right-handed alpha
Helix 47
47
C
289 291Right-handed 310
Helix 48
48
C
314 323Right-handed alpha
Helix 49
49
C
331 349Right-handed alpha
Helix 50
50
C
351 371Right-handed alpha
Helix 51
51
C
376 383Right-handed alpha
Helix 52
52
C
387 391Right-handed 310
Helix 53
53
C
393 410Right-handed alpha
Helix 54
54
D
17 32Right-handed alpha
Helix 55
55
D
46 52Right-handed alpha
Helix 56
56
D
55 69Right-handed alpha
Helix 57
57
D
80 87Right-handed alpha
Helix 58
58
D
95 105Right-handed alpha
Helix 59
59
D
137 142Right-handed 310
Helix 60
60
D
188 206Right-handed alpha
Helix 61
61
D
220 237Right-handed alpha
Helix 62
62
D
237 245Right-handed alpha
Helix 63
63
D
253 263Right-handed alpha
Helix 64
64
D
273 288Right-handed alpha
Helix 65
65
D
289 291Right-handed 310
Helix 66
66
D
314 323Right-handed alpha
Helix 67
67
D
331 349Right-handed alpha
Helix 68
68
D
351 371Right-handed alpha
Helix 69
69
D
376 384Right-handed alpha
Helix 70
70
D
393 410Right-handed alpha
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There are 12 sheets in PDB entry 2QFV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
36 37parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
11 15parallel
Strand 3
A
71 73parallel
Strand 4
A
305 309parallel
Strand 5
A
293 298anti-parallel
Strand 6
A
107 112anti-parallel
Strand 7
A
127 134anti-parallel
Strand 8
A
265 272parallel
Strand 9
A
209 213parallel
Strand 10
A
248 252parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
179 187anti-parallel
Strand 3
B
179 187anti-parallel
Strand 4
B
143 147anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 175first strand
Strand 2
A
151 159anti-parallel
Strand 3
B
151 159anti-parallel
Strand 4
B
168 175anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
36 37parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
11 15parallel
Strand 3
B
70 73parallel
Strand 4
B
305 309parallel
Strand 5
B
293 298anti-parallel
Strand 6
B
107 112anti-parallel
Strand 7
B
127 133anti-parallel
Strand 8
B
265 271parallel
Strand 9
B
208 213parallel
Strand 10
B
248 252parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
36 37parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 44first strand
Strand 2
C
11 15parallel
Strand 3
C
71 73parallel
Strand 4
C
305 309parallel
Strand 5
C
293 298anti-parallel
Strand 6
C
107 112anti-parallel
Strand 7
C
127 133anti-parallel
Strand 8
C
265 271parallel
Strand 9
C
208 213parallel
Strand 10
C
248 252parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 147first strand
Strand 2
C
179 187anti-parallel
Strand 3
D
179 187anti-parallel
Strand 4
D
143 147anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 175first strand
Strand 2
C
151 159anti-parallel
Strand 3
D
151 159anti-parallel
Strand 4
D
168 175anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
36 37parallel
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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 44first strand
Strand 2
D
11 15parallel
Strand 3
D
71 73parallel
Strand 4
D
305 309parallel
Strand 5
D
293 298anti-parallel
Strand 6
D
107 112anti-parallel
Strand 7
D
127 134anti-parallel
Strand 8
D
265 272parallel
Strand 9
D
208 213parallel
Strand 10
D
248 252parallel
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