Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJK entry

There are 18 chains in PDB entry 2QJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3ALA 430
B
ALA 1LYS 256
C
GLY 9GLY 187
D
GLY 3ALA 430
E
ALA 1LYS 256
F
GLY 9GLY 187
G
GLY 3ALA 430
H
ALA 1LYS 256
I
GLY 9GLY 187
J
GLY 3ALA 430
K
ALA 1LYS 256
L
GLY 9GLY 187
M
GLY 3ALA 430
N
ALA 1LYS 256
O
GLY 9GLY 187
P
GLY 3ALA 430
Q
ALA 1LYS 256
R
GLY 9GLY 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are218 helices in PDB entry 2QJK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
24 34Right-handed alpha
Helix 3
3
A
42 45Right-handed 310
Helix 4
4
A
46 67Right-handed alpha
Helix 5
5
A
72 86Right-handed alpha
Helix 6
6
A
89 119Right-handed alpha
Helix 7
7
A
125 149Right-handed alpha
Helix 8
8
A
152 168Right-handed alpha
Helix 9
9
A
169 171Right-handed 310
Helix 10
10
A
172 182Right-handed alpha
Helix 11
11
A
187 220Right-handed alpha
Helix 12
12
A
233 240Right-handed alpha
Helix 13
13
A
244 270Right-handed alpha
Helix 14
14
A
276 281Right-handed 310
Helix 15
15
A
298 308Right-handed alpha
Helix 16
16
A
312 322Right-handed alpha
Helix 17
17
A
327 350Right-handed alpha
Helix 18
18
A
356 359Right-handed 310
Helix 19
19
A
360 382Right-handed alpha
Helix 20
20
A
388 406Right-handed alpha
Helix 21
21
A
406 415Right-handed alpha
Helix 22
22
A
423 430Right-handed alpha
Helix 23
23
B
21 35Right-handed alpha
Helix 24
24
B
36 39Right-handed 310
Helix 25
25
B
46 51Right-handed 310
Helix 26
26
B
59 67Right-handed alpha
Helix 27
27
B
68 70Right-handed 310
Helix 28
28
B
102 106Right-handed 310
Helix 29
29
B
117 124Right-handed alpha
Helix 30
30
B
126 137Right-handed alpha
Helix 31
31
B
143 147Right-handed 310
Helix 32
32
B
166 170Right-handed 310
Helix 33
33
B
203 220Right-handed alpha
Helix 34
34
B
222 254Right-handed alpha
Helix 35
35
C
9 37Right-handed alpha
Helix 36
36
C
78 88Right-handed alpha
Helix 37
37
C
89 93Right-handed 310
Helix 38
38
C
110 114Right-handed 310
Helix 39
39
D
13 21Right-handed alpha
Helix 40
40
D
24 35Right-handed alpha
Helix 41
41
D
42 45Right-handed 310
Helix 42
42
D
46 67Right-handed alpha
Helix 43
43
D
72 86Right-handed alpha
Helix 44
44
D
89 119Right-handed alpha
Helix 45
45
D
125 149Right-handed alpha
Helix 46
46
D
152 168Right-handed alpha
Helix 47
47
D
169 171Right-handed 310
Helix 48
48
D
172 182Right-handed alpha
Helix 49
49
D
187 220Right-handed alpha
Helix 50
50
D
233 240Right-handed alpha
Helix 51
51
D
246 270Right-handed alpha
Helix 52
52
D
276 281Right-handed 310
Helix 53
53
D
298 308Right-handed alpha
Helix 54
54
D
312 322Right-handed alpha
Helix 55
55
D
327 350Right-handed alpha
Helix 56
56
D
356 360Right-handed 310
Helix 57
57
D
362 382Right-handed alpha
Helix 58
58
D
388 406Right-handed alpha
Helix 59
59
D
406 415Right-handed alpha
Helix 60
60
D
423 430Right-handed alpha
Helix 61
61
E
21 35Right-handed alpha
Helix 62
62
E
36 39Right-handed 310
Helix 63
63
E
46 51Right-handed 310
Helix 64
64
E
59 67Right-handed alpha
Helix 65
65
E
117 124Right-handed alpha
Helix 66
66
E
126 137Right-handed alpha
Helix 67
67
E
143 147Right-handed 310
Helix 68
68
E
166 170Right-handed 310
Helix 69
69
E
203 220Right-handed alpha
Helix 70
70
E
222 254Right-handed alpha
Helix 71
71
F
9 37Right-handed alpha
Helix 72
72
F
78 87Right-handed alpha
Helix 73
73
F
89 93Right-handed 310
Helix 74
74
F
110 115Right-handed alpha
Helix 75
75
G
13 21Right-handed alpha
Helix 76
76
G
24 35Right-handed alpha
Helix 77
77
G
42 45Right-handed 310
Helix 78
78
G
46 67Right-handed alpha
Helix 79
79
G
72 86Right-handed alpha
Helix 80
80
G
89 118Right-handed alpha
Helix 81
81
G
125 149Right-handed alpha
Helix 82
82
G
152 168Right-handed alpha
Helix 83
83
G
169 171Right-handed 310
Helix 84
84
G
172 182Right-handed alpha
Helix 85
85
G
187 220Right-handed alpha
Helix 86
86
G
233 240Right-handed alpha
Helix 87
87
G
244 270Right-handed alpha
Helix 88
88
G
276 281Right-handed 310
Helix 89
89
G
298 308Right-handed alpha
Helix 90
90
G
312 322Right-handed alpha
Helix 91
91
G
327 350Right-handed alpha
Helix 92
92
G
356 359Right-handed 310
Helix 93
93
G
360 382Right-handed alpha
Helix 94
94
G
388 406Right-handed alpha
Helix 95
95
G
406 415Right-handed alpha
Helix 96
96
G
423 430Right-handed alpha
Helix 97
97
H
21 35Right-handed alpha
Helix 98
98
H
36 39Right-handed 310
Helix 99
99
H
46 51Right-handed 310
Helix 100
100
H
59 67Right-handed alpha
Helix 101
101
H
102 107Right-handed alpha
Helix 102
102
H
117 124Right-handed alpha
Helix 103
103
H
126 137Right-handed alpha
Helix 104
104
H
143 147Right-handed 310
Helix 105
105
H
166 170Right-handed 310
Helix 106
106
H
203 220Right-handed alpha
Helix 107
107
H
222 254Right-handed alpha
Helix 108
108
I
9 37Right-handed alpha
Helix 109
109
I
78 87Right-handed alpha
Helix 110
110
I
89 93Right-handed 310
Helix 111
111
I
110 114Right-handed 310
Helix 112
112
J
13 21Right-handed alpha
Helix 113
113
J
24 35Right-handed alpha
Helix 114
114
J
46 67Right-handed alpha
Helix 115
115
J
72 86Right-handed alpha
Helix 116
116
J
89 119Right-handed alpha
Helix 117
117
J
125 149Right-handed alpha
Helix 118
118
J
152 168Right-handed alpha
Helix 119
119
J
169 171Right-handed 310
Helix 120
120
J
172 182Right-handed alpha
Helix 121
121
J
187 220Right-handed alpha
Helix 122
122
J
233 240Right-handed alpha
Helix 123
123
J
244 270Right-handed alpha
Helix 124
124
J
276 281Right-handed 310
Helix 125
125
J
298 308Right-handed alpha
Helix 126
126
J
312 322Right-handed alpha
Helix 127
127
J
327 350Right-handed alpha
Helix 128
128
J
356 360Right-handed 310
Helix 129
129
J
362 382Right-handed alpha
Helix 130
130
J
388 406Right-handed alpha
Helix 131
131
J
406 415Right-handed alpha
Helix 132
132
J
423 430Right-handed alpha
Helix 133
133
K
21 35Right-handed alpha
Helix 134
134
K
36 39Right-handed 310
Helix 135
135
K
46 51Right-handed 310
Helix 136
136
K
59 67Right-handed alpha
Helix 137
137
K
102 106Right-handed 310
Helix 138
138
K
117 124Right-handed alpha
Helix 139
139
K
126 137Right-handed alpha
Helix 140
140
K
143 147Right-handed 310
Helix 141
141
K
166 170Right-handed 310
Helix 142
142
K
203 220Right-handed alpha
Helix 143
143
K
222 254Right-handed alpha
Helix 144
144
L
9 37Right-handed alpha
Helix 145
145
L
78 87Right-handed alpha
Helix 146
146
L
88 93Right-handed 310
Helix 147
147
L
110 114Right-handed 310
Helix 148
148
M
13 21Right-handed alpha
Helix 149
149
M
24 35Right-handed alpha
Helix 150
150
M
42 45Right-handed 310
Helix 151
151
M
46 67Right-handed alpha
Helix 152
152
M
72 86Right-handed alpha
Helix 153
153
M
89 118Right-handed alpha
Helix 154
154
M
125 149Right-handed alpha
Helix 155
155
M
152 168Right-handed alpha
Helix 156
156
M
169 171Right-handed 310
Helix 157
157
M
172 182Right-handed alpha
Helix 158
158
M
187 220Right-handed alpha
Helix 159
159
M
233 240Right-handed alpha
Helix 160
160
M
244 270Right-handed alpha
Helix 161
161
M
276 281Right-handed 310
Helix 162
162
M
298 308Right-handed alpha
Helix 163
163
M
312 322Right-handed alpha
Helix 164
164
M
327 350Right-handed alpha
Helix 165
165
M
356 359Right-handed 310
Helix 166
166
M
360 382Right-handed alpha
Helix 167
167
M
388 406Right-handed alpha
Helix 168
168
M
406 415Right-handed alpha
Helix 169
169
M
423 430Right-handed alpha
Helix 170
170
N
21 35Right-handed alpha
Helix 171
171
N
36 39Right-handed 310
Helix 172
172
N
46 51Right-handed 310
Helix 173
173
N
59 67Right-handed alpha
Helix 174
174
N
102 107Right-handed alpha
Helix 175
175
N
117 124Right-handed alpha
Helix 176
176
N
126 137Right-handed alpha
Helix 177
177
N
143 147Right-handed 310
Helix 178
178
N
166 170Right-handed 310
Helix 179
179
N
203 220Right-handed alpha
Helix 180
180
N
222 254Right-handed alpha
Helix 181
181
O
9 37Right-handed alpha
Helix 182
182
O
78 87Right-handed alpha
Helix 183
183
O
110 114Right-handed 310
Helix 184
184
P
13 21Right-handed alpha
Helix 185
185
P
24 35Right-handed alpha
Helix 186
186
P
42 45Right-handed 310
Helix 187
187
P
46 67Right-handed alpha
Helix 188
188
P
72 86Right-handed alpha
Helix 189
189
P
89 118Right-handed alpha
Helix 190
190
P
125 149Right-handed alpha
Helix 191
191
P
152 168Right-handed alpha
Helix 192
192
P
169 171Right-handed 310
Helix 193
193
P
172 182Right-handed alpha
Helix 194
194
P
187 220Right-handed alpha
Helix 195
195
P
233 240Right-handed alpha
Helix 196
196
P
244 270Right-handed alpha
Helix 197
197
P
276 281Right-handed 310
Helix 198
198
P
298 308Right-handed alpha
Helix 199
199
P
312 322Right-handed alpha
Helix 200
200
P
327 350Right-handed alpha
Helix 201
201
P
356 359Right-handed 310
Helix 202
202
P
360 382Right-handed alpha
Helix 203
203
P
388 406Right-handed alpha
Helix 204
204
P
406 415Right-handed alpha
Helix 205
205
P
423 430Right-handed alpha
Helix 206
206
Q
21 35Right-handed alpha
Helix 207
207
Q
36 39Right-handed 310
Helix 208
208
Q
46 51Right-handed 310
Helix 209
209
Q
59 67Right-handed alpha
Helix 210
210
Q
117 124Right-handed alpha
Helix 211
211
Q
126 137Right-handed alpha
Helix 212
212
Q
143 147Right-handed 310
Helix 213
213
Q
166 170Right-handed 310
Helix 214
214
Q
203 220Right-handed alpha
Helix 215
215
Q
222 254Right-handed alpha
Helix 216
216
R
9 37Right-handed alpha
Helix 217
217
R
78 87Right-handed alpha
Helix 218
218
R
110 115Right-handed alpha
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There are 35 sheets in PDB entry 2QJK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 38first strand
Strand 2
A
241 243anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
155 157first strand
Strand 2
B
181 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
52 53first strand
Strand 2
C
183 184anti-parallel
Strand 3
C
178 180anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
61 67first strand
Strand 2
C
70 76anti-parallel
Strand 3
C
122 126anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
137 141first strand
Strand 2
C
146 149anti-parallel
Strand 3
C
154 156anti-parallel
Strand 4
C
162 164anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 38first strand
Strand 2
D
241 243anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
71 73first strand
Strand 2
E
80 82anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
155 157first strand
Strand 2
E
181 183anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
52 53first strand
Strand 2
F
183 184anti-parallel
Strand 3
F
178 180anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
61 67first strand
Strand 2
F
70 76anti-parallel
Strand 3
F
122 126anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
137 141first strand
Strand 2
F
146 149anti-parallel
Strand 3
F
154 156anti-parallel
Strand 4
F
162 164anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
36 38first strand
Strand 2
G
241 243anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
71 73first strand
Strand 2
H
80 82anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
155 157first strand
Strand 2
H
181 183anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
52 53first strand
Strand 2
I
183 184anti-parallel
Strand 3
I
178 180anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
61 67first strand
Strand 2
I
70 76anti-parallel
Strand 3
I
122 126anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
137 141first strand
Strand 2
I
145 149anti-parallel
Strand 3
I
154 157anti-parallel
Strand 4
I
162 164anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
36 38first strand
Strand 2
J
241 243anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
71 73first strand
Strand 2
K
80 82anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
155 157first strand
Strand 2
K
181 183anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
52 53first strand
Strand 2
L
183 184anti-parallel
Strand 3
L
178 180anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
61 67first strand
Strand 2
L
70 76anti-parallel
Strand 3
L
122 126anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
137 141first strand
Strand 2
L
146 149anti-parallel
Strand 3
L
154 156anti-parallel
Strand 4
L
162 164anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
36 38first strand
Strand 2
M
241 243anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
71 73first strand
Strand 2
N
80 82anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
155 157first strand
Strand 2
N
181 183anti-parallel
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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
52 53first strand
Strand 2
O
183 184anti-parallel
Strand 3
O
178 180anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
61 67first strand
Strand 2
O
70 76anti-parallel
Strand 3
O
122 126anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
137 141first strand
Strand 2
O
146 149anti-parallel
Strand 3
O
154 156anti-parallel
Strand 4
O
162 164anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
36 38first strand
Strand 2
P
241 243anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
71 73first strand
Strand 2
Q
80 82anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
155 157first strand
Strand 2
Q
181 183anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
52 53first strand
Strand 2
R
183 184anti-parallel
Strand 3
R
178 180anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
61 67first strand
Strand 2
R
70 76anti-parallel
Strand 3
R
122 126anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
137 141first strand
Strand 2
R
145 149anti-parallel
Strand 3
R
154 157anti-parallel
Strand 4
R
162 164anti-parallel
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