Analysis of interatomic Contacts of Structural Units in PDB entry:
2QJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QJY entry

There are 18 chains in PDB entry 2QJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3ALA 430
B
ALA 1LYS 256
C
GLY 9GLY 187
D
GLY 3ALA 430
E
ALA 1LYS 256
F
GLY 9GLY 187
G
GLY 3ALA 430
H
ALA 1LYS 256
I
GLY 9GLY 187
J
GLY 3ALA 430
K
ALA 1LYS 256
L
GLY 9GLY 187
M
GLY 3ALA 430
N
ALA 1LYS 256
O
GLY 9GLY 187
P
GLY 3ALA 430
Q
ALA 1LYS 256
R
GLY 9GLY 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are218 helices in PDB entry 2QJY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
24 34Right-handed alpha
Helix 3
3
A
42 45Right-handed 310
Helix 4
4
A
46 67Right-handed alpha
Helix 5
5
A
75 86Right-handed alpha
Helix 6
6
A
89 119Right-handed alpha
Helix 7
7
A
125 149Right-handed alpha
Helix 8
8
A
152 168Right-handed alpha
Helix 9
9
A
172 182Right-handed alpha
Helix 10
10
A
187 220Right-handed alpha
Helix 11
11
A
233 240Right-handed alpha
Helix 12
12
A
244 270Right-handed alpha
Helix 13
13
A
276 281Right-handed 310
Helix 14
14
A
295 297Right-handed 310
Helix 15
15
A
298 308Right-handed alpha
Helix 16
16
A
312 322Right-handed alpha
Helix 17
17
A
327 345Right-handed alpha
Helix 18
18
A
345 350Right-handed alpha
Helix 19
19
A
356 359Right-handed 310
Helix 20
20
A
360 382Right-handed alpha
Helix 21
21
A
388 406Right-handed alpha
Helix 22
22
A
406 415Right-handed alpha
Helix 23
23
A
423 430Right-handed alpha
Helix 24
24
B
21 35Right-handed alpha
Helix 25
25
B
36 39Right-handed 310
Helix 26
26
B
46 51Right-handed 310
Helix 27
27
B
59 67Right-handed alpha
Helix 28
28
B
117 124Right-handed alpha
Helix 29
29
B
126 137Right-handed alpha
Helix 30
30
B
143 147Right-handed 310
Helix 31
31
B
166 170Right-handed 310
Helix 32
32
B
203 220Right-handed alpha
Helix 33
33
B
222 254Right-handed alpha
Helix 34
34
C
9 37Right-handed alpha
Helix 35
35
C
78 87Right-handed alpha
Helix 36
36
C
89 93Right-handed 310
Helix 37
37
C
110 115Right-handed 310
Helix 38
38
D
13 21Right-handed alpha
Helix 39
39
D
24 34Right-handed alpha
Helix 40
40
D
42 45Right-handed 310
Helix 41
41
D
46 67Right-handed alpha
Helix 42
42
D
75 86Right-handed alpha
Helix 43
43
D
89 119Right-handed alpha
Helix 44
44
D
125 149Right-handed alpha
Helix 45
45
D
152 168Right-handed alpha
Helix 46
46
D
172 182Right-handed alpha
Helix 47
47
D
187 220Right-handed alpha
Helix 48
48
D
233 240Right-handed alpha
Helix 49
49
D
244 270Right-handed alpha
Helix 50
50
D
276 281Right-handed 310
Helix 51
51
D
295 297Right-handed 310
Helix 52
52
D
298 308Right-handed alpha
Helix 53
53
D
312 322Right-handed alpha
Helix 54
54
D
327 345Right-handed alpha
Helix 55
55
D
345 350Right-handed alpha
Helix 56
56
D
356 360Right-handed 310
Helix 57
57
D
362 382Right-handed alpha
Helix 58
58
D
388 406Right-handed alpha
Helix 59
59
D
406 415Right-handed alpha
Helix 60
60
D
423 430Right-handed alpha
Helix 61
61
E
21 35Right-handed alpha
Helix 62
62
E
36 39Right-handed 310
Helix 63
63
E
46 51Right-handed 310
Helix 64
64
E
59 67Right-handed alpha
Helix 65
65
E
117 124Right-handed alpha
Helix 66
66
E
126 137Right-handed alpha
Helix 67
67
E
143 147Right-handed 310
Helix 68
68
E
166 170Right-handed 310
Helix 69
69
E
203 220Right-handed alpha
Helix 70
70
E
222 254Right-handed alpha
Helix 71
71
F
9 37Right-handed alpha
Helix 72
72
F
78 88Right-handed alpha
Helix 73
73
F
89 93Right-handed 310
Helix 74
74
F
110 115Right-handed 310
Helix 75
75
G
13 21Right-handed alpha
Helix 76
76
G
24 34Right-handed alpha
Helix 77
77
G
42 45Right-handed 310
Helix 78
78
G
46 67Right-handed alpha
Helix 79
79
G
75 86Right-handed alpha
Helix 80
80
G
89 119Right-handed alpha
Helix 81
81
G
125 149Right-handed alpha
Helix 82
82
G
152 168Right-handed alpha
Helix 83
83
G
172 182Right-handed alpha
Helix 84
84
G
187 220Right-handed alpha
Helix 85
85
G
233 240Right-handed alpha
Helix 86
86
G
244 270Right-handed alpha
Helix 87
87
G
276 281Right-handed 310
Helix 88
88
G
295 297Right-handed 310
Helix 89
89
G
298 308Right-handed alpha
Helix 90
90
G
312 322Right-handed alpha
Helix 91
91
G
327 345Right-handed alpha
Helix 92
92
G
345 350Right-handed alpha
Helix 93
93
G
356 359Right-handed 310
Helix 94
94
G
360 382Right-handed alpha
Helix 95
95
G
388 406Right-handed alpha
Helix 96
96
G
406 415Right-handed alpha
Helix 97
97
G
423 430Right-handed alpha
Helix 98
98
H
21 35Right-handed alpha
Helix 99
99
H
36 39Right-handed 310
Helix 100
100
H
46 51Right-handed 310
Helix 101
101
H
59 67Right-handed alpha
Helix 102
102
H
117 124Right-handed alpha
Helix 103
103
H
126 137Right-handed alpha
Helix 104
104
H
166 170Right-handed 310
Helix 105
105
H
203 220Right-handed alpha
Helix 106
106
H
222 254Right-handed alpha
Helix 107
107
I
9 37Right-handed alpha
Helix 108
108
I
78 87Right-handed alpha
Helix 109
109
I
89 93Right-handed 310
Helix 110
110
I
110 115Right-handed 310
Helix 111
111
J
13 21Right-handed alpha
Helix 112
112
J
24 34Right-handed alpha
Helix 113
113
J
46 67Right-handed alpha
Helix 114
114
J
75 86Right-handed alpha
Helix 115
115
J
89 119Right-handed alpha
Helix 116
116
J
125 149Right-handed alpha
Helix 117
117
J
152 168Right-handed alpha
Helix 118
118
J
172 182Right-handed alpha
Helix 119
119
J
187 220Right-handed alpha
Helix 120
120
J
233 240Right-handed alpha
Helix 121
121
J
244 270Right-handed alpha
Helix 122
122
J
276 281Right-handed 310
Helix 123
123
J
295 297Right-handed 310
Helix 124
124
J
298 308Right-handed alpha
Helix 125
125
J
312 322Right-handed alpha
Helix 126
126
J
327 345Right-handed alpha
Helix 127
127
J
345 350Right-handed alpha
Helix 128
128
J
356 360Right-handed 310
Helix 129
129
J
362 382Right-handed alpha
Helix 130
130
J
388 406Right-handed alpha
Helix 131
131
J
406 415Right-handed alpha
Helix 132
132
J
423 430Right-handed alpha
Helix 133
133
K
21 35Right-handed alpha
Helix 134
134
K
36 39Right-handed 310
Helix 135
135
K
46 51Right-handed 310
Helix 136
136
K
59 67Right-handed alpha
Helix 137
137
K
117 124Right-handed alpha
Helix 138
138
K
126 137Right-handed alpha
Helix 139
139
K
143 147Right-handed 310
Helix 140
140
K
166 170Right-handed 310
Helix 141
141
K
203 220Right-handed alpha
Helix 142
142
K
222 254Right-handed alpha
Helix 143
143
L
9 37Right-handed alpha
Helix 144
144
L
78 87Right-handed alpha
Helix 145
145
L
110 115Right-handed 310
Helix 146
146
M
13 21Right-handed alpha
Helix 147
147
M
24 34Right-handed alpha
Helix 148
148
M
42 45Right-handed 310
Helix 149
149
M
46 67Right-handed alpha
Helix 150
150
M
75 86Right-handed alpha
Helix 151
151
M
89 119Right-handed alpha
Helix 152
152
M
125 149Right-handed alpha
Helix 153
153
M
152 168Right-handed alpha
Helix 154
154
M
172 182Right-handed alpha
Helix 155
155
M
187 220Right-handed alpha
Helix 156
156
M
233 240Right-handed alpha
Helix 157
157
M
244 270Right-handed alpha
Helix 158
158
M
276 281Right-handed 310
Helix 159
159
M
295 297Right-handed 310
Helix 160
160
M
298 308Right-handed alpha
Helix 161
161
M
312 322Right-handed alpha
Helix 162
162
M
327 350Right-handed alpha
Helix 163
163
M
356 360Right-handed 310
Helix 164
164
M
362 382Right-handed alpha
Helix 165
165
M
388 406Right-handed alpha
Helix 166
166
M
406 415Right-handed alpha
Helix 167
167
M
423 430Right-handed alpha
Helix 168
168
N
21 35Right-handed alpha
Helix 169
169
N
36 39Right-handed 310
Helix 170
170
N
46 51Right-handed 310
Helix 171
171
N
59 67Right-handed alpha
Helix 172
172
N
117 124Right-handed alpha
Helix 173
173
N
126 137Right-handed alpha
Helix 174
174
N
143 147Right-handed 310
Helix 175
175
N
166 170Right-handed 310
Helix 176
176
N
203 220Right-handed alpha
Helix 177
177
N
222 254Right-handed alpha
Helix 178
178
O
9 37Right-handed alpha
Helix 179
179
O
78 88Right-handed alpha
Helix 180
180
O
89 93Right-handed 310
Helix 181
181
O
110 115Right-handed 310
Helix 182
182
P
13 21Right-handed alpha
Helix 183
183
P
24 35Right-handed alpha
Helix 184
184
P
42 45Right-handed 310
Helix 185
185
P
46 67Right-handed alpha
Helix 186
186
P
75 86Right-handed alpha
Helix 187
187
P
89 119Right-handed alpha
Helix 188
188
P
125 149Right-handed alpha
Helix 189
189
P
152 168Right-handed alpha
Helix 190
190
P
172 182Right-handed alpha
Helix 191
191
P
187 220Right-handed alpha
Helix 192
192
P
233 240Right-handed alpha
Helix 193
193
P
244 270Right-handed alpha
Helix 194
194
P
276 281Right-handed 310
Helix 195
195
P
295 297Right-handed 310
Helix 196
196
P
298 308Right-handed alpha
Helix 197
197
P
312 322Right-handed alpha
Helix 198
198
P
327 345Right-handed alpha
Helix 199
199
P
345 350Right-handed alpha
Helix 200
200
P
356 359Right-handed 310
Helix 201
201
P
360 382Right-handed alpha
Helix 202
202
P
388 406Right-handed alpha
Helix 203
203
P
406 415Right-handed alpha
Helix 204
204
P
423 430Right-handed alpha
Helix 205
205
Q
21 35Right-handed alpha
Helix 206
206
Q
36 39Right-handed 310
Helix 207
207
Q
46 51Right-handed 310
Helix 208
208
Q
59 67Right-handed alpha
Helix 209
209
Q
117 124Right-handed alpha
Helix 210
210
Q
126 137Right-handed alpha
Helix 211
211
Q
143 147Right-handed 310
Helix 212
212
Q
166 170Right-handed 310
Helix 213
213
Q
203 220Right-handed alpha
Helix 214
214
Q
222 254Right-handed alpha
Helix 215
215
R
9 37Right-handed alpha
Helix 216
216
R
78 87Right-handed alpha
Helix 217
217
R
89 93Right-handed 310
Helix 218
218
R
110 115Right-handed 310
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There are 36 sheets in PDB entry 2QJY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 38first strand
Strand 2
A
241 243anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 73first strand
Strand 2
B
80 82anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
155 157first strand
Strand 2
B
181 183anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
50 53first strand
Strand 2
C
183 186anti-parallel
Strand 3
C
176 180anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
61 67first strand
Strand 2
C
70 76anti-parallel
Strand 3
C
122 126anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
137 141first strand
Strand 2
C
146 149anti-parallel
Strand 3
C
154 156anti-parallel
Strand 4
C
162 164anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 38first strand
Strand 2
D
241 243anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
71 73first strand
Strand 2
E
80 82anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
155 157first strand
Strand 2
E
181 183anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
50 53first strand
Strand 2
F
183 186anti-parallel
Strand 3
F
176 180anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
61 67first strand
Strand 2
F
70 76anti-parallel
Strand 3
F
122 126anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
137 141first strand
Strand 2
F
146 149anti-parallel
Strand 3
F
154 156anti-parallel
Strand 4
F
162 164anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
36 38first strand
Strand 2
G
241 243anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
71 73first strand
Strand 2
H
80 82anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
155 157first strand
Strand 2
H
181 183anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
50 53first strand
Strand 2
I
183 186anti-parallel
Strand 3
I
176 180anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
61 67first strand
Strand 2
I
70 76anti-parallel
Strand 3
I
122 126anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
137 141first strand
Strand 2
I
146 149anti-parallel
Strand 3
I
154 156anti-parallel
Strand 4
I
162 164anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
36 38first strand
Strand 2
J
241 243anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
71 73first strand
Strand 2
K
80 82anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
155 157first strand
Strand 2
K
181 183anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
50 53first strand
Strand 2
L
183 186anti-parallel
Strand 3
L
176 180anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
61 67first strand
Strand 2
L
70 76anti-parallel
Strand 3
L
122 126anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
137 141first strand
Strand 2
L
146 149anti-parallel
Strand 3
L
154 156anti-parallel
Strand 4
L
162 164anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
36 38first strand
Strand 2
M
241 243anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
71 73first strand
Strand 2
N
80 82anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
155 157first strand
Strand 2
N
181 183anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
50 53first strand
Strand 2
O
183 186anti-parallel
Strand 3
O
176 180anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
61 67first strand
Strand 2
O
70 76anti-parallel
Strand 3
O
122 126anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
137 141first strand
Strand 2
O
146 149anti-parallel
Strand 3
O
154 156anti-parallel
Strand 4
O
162 164anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
36 38first strand
Strand 2
P
241 243anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
71 73first strand
Strand 2
Q
80 82anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
155 157first strand
Strand 2
Q
181 183anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
50 53first strand
Strand 2
R
183 186anti-parallel
Strand 3
R
176 180anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
61 67first strand
Strand 2
R
70 76anti-parallel
Strand 3
R
122 126anti-parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
137 141first strand
Strand 2
R
146 149anti-parallel
Strand 3
R
154 156anti-parallel
Strand 4
R
162 164anti-parallel
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