Analysis of interatomic Contacts of Structural Units in PDB entry:
2QR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QR8 entry

There is 1 chain in PDB entry 2QR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 417GLN 714
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2QR8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
460 471Right-handed alpha
Helix 2
2
A
500 507Right-handed alpha
Helix 3
3
A
512 533Right-handed alpha
Helix 4
4
A
541 543Right-handed 310
Helix 5
5
A
553 555Right-handed 310
Helix 6
6
A
586 614Right-handed alpha
Helix 7
7
A
625 636Right-handed alpha
Helix 8
8
A
642 647Right-handed alpha
Helix 9
9
A
649 660Right-handed alpha
Helix 10
10
A
669 675Right-handed alpha
Helix 11
11
A
676 681Right-handed alpha
Helix 12
12
A
682 685Right-handed 310
Helix 13
13
A
695 711Right-handed alpha
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There are 3 sheets in PDB entry 2QR8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
422 430first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
447 454anti-parallel
Strand 4
A
488 494anti-parallel
Strand 5
A
479 484anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
535 536first strand
Strand 2
A
566 567anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
545 547first strand
Strand 2
A
557 559anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il