Analysis of interatomic Contacts of Structural Units in PDB entry:
2QUK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QUK entry

There is 1 chain in PDB entry 2QUK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 96ASP 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2QUK. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
100 108Right-handed alpha
Helix 2
2
A
113 125Right-handed alpha
Helix 3
3
A
129 134Right-handed alpha
Helix 4
4
A
142 152Right-handed alpha
Helix 5
5
A
173 188Right-handed alpha
Helix 6
6
A
196 204Right-handed alpha
Helix 7
7
A
207 225Right-handed alpha
Helix 8
8
A
237 241Right-handed alpha
Helix 9
9
A
242 244Right-handed 310
Helix 10
10
A
246 257Right-handed alpha
Helix 11
11
A
259 265Right-handed alpha
Helix 12
12
A
274 280Right-handed alpha
Helix 13
13
A
280 286Right-handed alpha
Helix 14
14
A
287 292Right-handed 310
Helix 15
15
A
293 298Right-handed alpha
Helix 16
16
A
313 323Right-handed alpha
Helix 17
17
A
324 328Right-handed 310
Helix 18
18
A
364 375Right-handed alpha
Helix 19
19
A
383 391Right-handed alpha
Helix 20
20
A
397 407Right-handed alpha
Helix 21
21
A
409 423Right-handed alpha
Helix 22
22
A
426 452Right-handed alpha
Helix 23
23
A
453 462Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2QUK.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
110 111first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
333 337anti-parallel
Strand 4
A
304 310parallel
Strand 5
A
156 162parallel
Strand 6
A
191 195parallel
Strand 7
A
232 236parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il