Analysis of interatomic Contacts of Structural Units in PDB entry:
2QVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QVC entry

There are 4 chains in PDB entry 2QVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 32ILE 333
B
 LEU 32ILE 333
C
 LEU 32ILE 333
D
 LEU 32ILE 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2QVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 60Right-handed alpha
Helix 2
2
A
72 86Right-handed alpha
Helix 3
3
A
101 111Right-handed alpha
Helix 4
4
A
134 150Right-handed alpha
Helix 5
5
A
165 180Right-handed alpha
Helix 6
6
A
195 210Right-handed alpha
Helix 7
7
A
222 234Right-handed alpha
Helix 8
8
A
248 257Right-handed alpha
Helix 9
9
A
267 285Right-handed alpha
Helix 10
10
A
286 293Right-handed alpha
Helix 11
11
A
318 330Right-handed alpha
Helix 12
12
B
42 60Right-handed alpha
Helix 13
13
B
72 86Right-handed alpha
Helix 14
14
B
101 111Right-handed alpha
Helix 15
15
B
134 150Right-handed alpha
Helix 16
16
B
165 179Right-handed alpha
Helix 17
17
B
195 204Right-handed alpha
Helix 18
18
B
222 234Right-handed alpha
Helix 19
19
B
248 257Right-handed alpha
Helix 20
20
B
267 285Right-handed alpha
Helix 21
21
B
286 292Right-handed alpha
Helix 22
22
B
318 329Right-handed alpha
Helix 23
23
C
42 60Right-handed alpha
Helix 24
24
C
72 86Right-handed alpha
Helix 25
25
C
101 111Right-handed alpha
Helix 26
26
C
134 150Right-handed alpha
Helix 27
27
C
165 178Right-handed alpha
Helix 28
28
C
195 210Right-handed alpha
Helix 29
29
C
222 234Right-handed alpha
Helix 30
30
C
248 257Right-handed alpha
Helix 31
31
C
267 285Right-handed alpha
Helix 32
32
C
286 293Right-handed alpha
Helix 33
33
C
318 329Right-handed alpha
Helix 34
34
D
42 60Right-handed alpha
Helix 35
35
D
72 86Right-handed alpha
Helix 36
36
D
101 111Right-handed alpha
Helix 37
37
D
134 150Right-handed alpha
Helix 38
38
D
165 180Right-handed alpha
Helix 39
39
D
195 210Right-handed alpha
Helix 40
40
D
222 234Right-handed alpha
Helix 41
41
D
248 257Right-handed alpha
Helix 42
42
D
267 285Right-handed alpha
Helix 43
43
D
286 293Right-handed alpha
Helix 44
44
D
318 329Right-handed alpha
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There are 8 sheets in PDB entry 2QVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
33 37parallel
Strand 3
A
90 93parallel
Strand 4
A
115 118parallel
Strand 5
A
129 132parallel
Strand 6
A
302 308parallel
Strand 7
A
296 299anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 191first strand
Strand 2
A
153 160parallel
Strand 3
A
215 218parallel
Strand 4
A
241 245parallel
Strand 5
A
262 265parallel
Strand 6
A
312 314anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
33 37parallel
Strand 3
B
90 93parallel
Strand 4
B
115 118parallel
Strand 5
B
129 132parallel
Strand 6
B
302 308parallel
Strand 7
B
296 299anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 191first strand
Strand 2
B
153 160parallel
Strand 3
B
215 218parallel
Strand 4
B
241 245parallel
Strand 5
B
262 265parallel
Strand 6
B
312 314anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
33 37parallel
Strand 3
C
91 93parallel
Strand 4
C
115 118parallel
Strand 5
C
129 132parallel
Strand 6
C
302 308parallel
Strand 7
C
296 299anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 191first strand
Strand 2
C
155 160parallel
Strand 3
C
215 218parallel
Strand 4
C
241 245parallel
Strand 5
C
262 265parallel
Strand 6
C
312 314anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 66first strand
Strand 2
D
33 37parallel
Strand 3
D
90 93parallel
Strand 4
D
115 118parallel
Strand 5
D
130 132parallel
Strand 6
D
302 308parallel
Strand 7
D
296 299anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 191first strand
Strand 2
D
153 160parallel
Strand 3
D
215 218parallel
Strand 4
D
241 245parallel
Strand 5
D
262 265parallel
Strand 6
D
312 314anti-parallel
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