Analysis of interatomic Contacts of Structural Units in PDB entry:
2QVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2QVW entry

There are 4 chains in PDB entry 2QVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	ALA 754
B	ALA 0	ALA 754
C	ALA 0	ALA 754
D	ALA 0	ALA 754

There are130 helices in PDB entry 2QVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	57	76	Right-handed alpha
Helix 2	2	A	82	89	Right-handed alpha
Helix 3	3	A	91	95	Right-handed 310
Helix 4	4	A	124	136	Right-handed alpha
Helix 5	5	A	139	143	Right-handed 310
Helix 6	6	A	193	200	Right-handed alpha
Helix 7	7	A	257	263	Right-handed alpha
Helix 8	8	A	264	283	Right-handed alpha
Helix 9	9	A	284	286	Right-handed 310
Helix 10	10	A	292	305	Right-handed alpha
Helix 11	11	A	322	326	Right-handed 310
Helix 12	12	A	327	355	Right-handed alpha
Helix 13	13	A	359	372	Right-handed alpha
Helix 14	14	A	372	383	Right-handed alpha
Helix 15	15	A	401	416	Right-handed alpha
Helix 16	16	A	418	432	Right-handed alpha
Helix 17	17	A	433	437	Right-handed 310
Helix 18	18	A	445	457	Right-handed alpha
Helix 19	19	A	461	472	Right-handed alpha
Helix 20	20	A	483	496	Right-handed alpha
Helix 21	21	A	497	515	Right-handed alpha
Helix 22	22	A	525	541	Right-handed alpha
Helix 23	23	A	588	601	Right-handed alpha
Helix 24	24	A	608	619	Right-handed alpha
Helix 25	25	A	628	641	Right-handed alpha
Helix 26	26	A	642	644	Right-handed 310
Helix 27	27	A	645	668	Right-handed alpha
Helix 28	28	A	672	683	Right-handed alpha
Helix 29	29	A	685	695	Right-handed alpha
Helix 30	30	A	698	708	Right-handed alpha
Helix 31	31	A	715	734	Right-handed alpha
Helix 32	32	A	734	746	Right-handed alpha
Helix 33	33	A	747	750	Right-handed 310
Helix 34	34	B	57	76	Right-handed alpha
Helix 35	35	B	82	89	Right-handed alpha
Helix 36	36	B	91	95	Right-handed 310
Helix 37	37	B	124	137	Right-handed alpha
Helix 38	38	B	193	200	Right-handed alpha
Helix 39	39	B	255	262	Right-handed alpha
Helix 40	40	B	264	283	Right-handed alpha
Helix 41	41	B	284	286	Right-handed 310
Helix 42	42	B	292	305	Right-handed alpha
Helix 43	43	B	322	326	Right-handed 310
Helix 44	44	B	327	355	Right-handed alpha
Helix 45	45	B	359	372	Right-handed alpha
Helix 46	46	B	372	383	Right-handed alpha
Helix 47	47	B	385	390	Right-handed alpha
Helix 48	48	B	401	415	Right-handed alpha
Helix 49	49	B	418	432	Right-handed alpha
Helix 50	50	B	433	437	Right-handed 310
Helix 51	51	B	445	457	Right-handed alpha
Helix 52	52	B	461	475	Right-handed alpha
Helix 53	53	B	483	496	Right-handed alpha
Helix 54	54	B	497	515	Right-handed alpha
Helix 55	55	B	525	541	Right-handed alpha
Helix 56	56	B	588	601	Right-handed alpha
Helix 57	57	B	607	619	Right-handed alpha
Helix 58	58	B	628	641	Right-handed alpha
Helix 59	59	B	645	668	Right-handed alpha
Helix 60	60	B	672	683	Right-handed alpha
Helix 61	61	B	685	695	Right-handed alpha
Helix 62	62	B	698	708	Right-handed alpha
Helix 63	63	B	715	734	Right-handed alpha
Helix 64	64	B	734	746	Right-handed alpha
Helix 65	65	B	747	750	Right-handed 310
Helix 66	66	C	57	76	Right-handed alpha
Helix 67	67	C	82	89	Right-handed alpha
Helix 68	68	C	91	95	Right-handed 310
Helix 69	69	C	124	137	Right-handed alpha
Helix 70	70	C	193	200	Right-handed alpha
Helix 71	71	C	251	254	Right-handed 310
Helix 72	72	C	255	261	Right-handed alpha
Helix 73	73	C	264	283	Right-handed alpha
Helix 74	74	C	284	286	Right-handed 310
Helix 75	75	C	292	305	Right-handed alpha
Helix 76	76	C	322	326	Right-handed 310
Helix 77	77	C	327	355	Right-handed alpha
Helix 78	78	C	359	372	Right-handed alpha
Helix 79	79	C	372	383	Right-handed alpha
Helix 80	80	C	401	416	Right-handed alpha
Helix 81	81	C	418	432	Right-handed alpha
Helix 82	82	C	433	437	Right-handed 310
Helix 83	83	C	445	457	Right-handed alpha
Helix 84	84	C	461	474	Right-handed alpha
Helix 85	85	C	483	496	Right-handed alpha
Helix 86	86	C	497	515	Right-handed alpha
Helix 87	87	C	525	541	Right-handed alpha
Helix 88	88	C	588	601	Right-handed alpha
Helix 89	89	C	608	619	Right-handed alpha
Helix 90	90	C	628	641	Right-handed alpha
Helix 91	91	C	645	668	Right-handed alpha
Helix 92	92	C	672	683	Right-handed alpha
Helix 93	93	C	685	695	Right-handed alpha
Helix 94	94	C	698	708	Right-handed alpha
Helix 95	95	C	716	734	Right-handed alpha
Helix 96	96	C	734	746	Right-handed alpha
Helix 97	97	C	747	750	Right-handed 310
Helix 98	98	D	57	76	Right-handed alpha
Helix 99	99	D	82	89	Right-handed alpha
Helix 100	100	D	91	95	Right-handed 310
Helix 101	101	D	124	137	Right-handed alpha
Helix 102	102	D	143	147	Right-handed 310
Helix 103	103	D	193	200	Right-handed alpha
Helix 104	104	D	255	263	Right-handed alpha
Helix 105	105	D	264	283	Right-handed alpha
Helix 106	106	D	284	286	Right-handed 310
Helix 107	107	D	292	305	Right-handed alpha
Helix 108	108	D	322	326	Right-handed 310
Helix 109	109	D	327	355	Right-handed alpha
Helix 110	110	D	359	372	Right-handed alpha
Helix 111	111	D	372	383	Right-handed alpha
Helix 112	112	D	384	389	Right-handed alpha
Helix 113	113	D	403	415	Right-handed alpha
Helix 114	114	D	418	432	Right-handed alpha
Helix 115	115	D	433	437	Right-handed 310
Helix 116	116	D	446	457	Right-handed alpha
Helix 117	117	D	461	473	Right-handed alpha
Helix 118	118	D	483	496	Right-handed alpha
Helix 119	119	D	497	515	Right-handed alpha
Helix 120	120	D	525	541	Right-handed alpha
Helix 121	121	D	588	602	Right-handed alpha
Helix 122	122	D	610	619	Right-handed alpha
Helix 123	123	D	628	641	Right-handed alpha
Helix 124	124	D	645	668	Right-handed alpha
Helix 125	125	D	672	683	Right-handed alpha
Helix 126	126	D	685	695	Right-handed alpha
Helix 127	127	D	698	708	Right-handed alpha
Helix 128	128	D	715	734	Right-handed alpha
Helix 129	129	D	734	746	Right-handed alpha
Helix 130	130	D	747	750	Right-handed 310

There are 16 sheets in PDB entry 2QVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	115	first strand
Strand 2	A	16	23	anti-parallel
Strand 3	A	4	11	anti-parallel
Strand 4	A	44	47	anti-parallel
Strand 5	A	33	35	anti-parallel
Strand 6	A	318	320	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	211	217	anti-parallel
Strand 3	A	168	179	anti-parallel
Strand 4	A	158	160	anti-parallel
Strand 5	A	248	249	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	189	192	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	545	first strand
Strand 2	A	560	562	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	115	first strand
Strand 2	B	16	23	anti-parallel
Strand 3	B	4	11	anti-parallel
Strand 4	B	44	47	anti-parallel
Strand 5	B	33	35	anti-parallel
Strand 6	B	318	320	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	211	217	anti-parallel
Strand 3	B	168	179	anti-parallel
Strand 4	B	158	160	anti-parallel
Strand 5	B	248	249	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	189	192	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	560	562	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	115	first strand
Strand 2	C	16	23	anti-parallel
Strand 3	C	4	11	anti-parallel
Strand 4	C	44	46	anti-parallel
Strand 5	C	33	35	anti-parallel
Strand 6	C	318	320	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	211	217	anti-parallel
Strand 3	C	168	179	anti-parallel
Strand 4	C	158	160	anti-parallel
Strand 5	C	248	249	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	189	192	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	543	544	first strand
Strand 2	C	561	562	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	4	11	anti-parallel
Strand 3	D	16	23	anti-parallel
Strand 4	D	110	115	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	242	first strand
Strand 2	D	211	217	anti-parallel
Strand 3	D	168	179	anti-parallel
Strand 4	D	158	160	anti-parallel
Strand 5	D	248	249	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	189	192	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	560	562	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2QVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
2QVW