Analysis of interatomic Contacts of Structural Units in PDB entry:
2QVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2QVY entry

There is 1 chain in PDB entry 2QVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
MET 1SER 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2QVY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
X
3 15Right-handed alpha
Helix 2
2
X
32 49Right-handed alpha
Helix 3
3
X
64 78Right-handed alpha
Helix 4
4
X
89 100Right-handed alpha
Helix 5
5
X
113 119Right-handed alpha
Helix 6
6
X
130 132Right-handed 310
Helix 7
7
X
177 188Right-handed alpha
Helix 8
8
X
207 212Right-handed alpha
Helix 9
9
X
214 221Right-handed alpha
Helix 10
10
X
232 244Right-handed alpha
Helix 11
11
X
251 264Right-handed alpha
Helix 12
12
X
285 296Right-handed alpha
Helix 13
13
X
368 375Right-handed alpha
Helix 14
14
X
413 422Right-handed alpha
Helix 15
15
X
457 467Right-handed alpha
Helix 16
16
X
471 475Right-handed 310
Helix 17
17
X
494 503Right-handed alpha
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There are 7 sheets in PDB entry 2QVY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
28 31first strand
Strand 2
X
19 23anti-parallel
Strand 3
X
224 227parallel
Strand 4
X
198 201parallel
Strand 5
X
247 249parallel
Strand 6
X
276 279parallel
Strand 7
X
299 306parallel
Strand 8
X
310 316anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
80 84first strand
Strand 2
X
56 60parallel
Strand 3
X
104 107parallel
Strand 4
X
125 128parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
155 160first strand
Strand 2
X
170 174anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
323 324first strand
Strand 2
X
395 400anti-parallel
Strand 3
X
380 389anti-parallel
Strand 4
X
351 356anti-parallel
Strand 5
X
332 335anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
323 324first strand
Strand 2
X
395 400anti-parallel
Strand 3
X
380 389anti-parallel
Strand 4
X
376 377anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
405 407first strand
Strand 2
X
410 412anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
427 437first strand
Strand 2
X
441 450anti-parallel
Strand 3
X
478 481parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il