Analysis of interatomic Contacts of Structural Units in PDB entry:
2R8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2R8K entry

There are 6 chains in PDB entry 2R8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Q
G 5 C 13
U
G 4 C 13
P
G 5 C 13
T
G 4 C 13
A
GLY -1ILE 509
B
GLY -1ILE 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2R8K. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
12 14Right-handed 310
Helix 3
3
A
33 43Right-handed alpha
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
76 82Right-handed alpha
Helix 6
6
A
128 144Right-handed alpha
Helix 7
7
A
161 172Right-handed alpha
Helix 8
8
A
183 187Right-handed alpha
Helix 9
9
A
187 197Right-handed alpha
Helix 10
10
A
209 215Right-handed 310
Helix 11
11
A
232 256Right-handed alpha
Helix 12
12
A
267 278Right-handed alpha
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
290 296Right-handed alpha
Helix 15
15
A
311 321Right-handed alpha
Helix 16
16
A
326 333Right-handed alpha
Helix 17
17
A
338 348Right-handed alpha
Helix 18
18
A
368 379Right-handed alpha
Helix 19
19
A
408 424Right-handed alpha
Helix 20
20
A
427 435Right-handed alpha
Helix 21
21
A
471 487Right-handed alpha
Helix 22
22
B
5 11Right-handed alpha
Helix 23
23
B
12 14Right-handed 310
Helix 24
24
B
33 43Right-handed alpha
Helix 25
25
B
63 68Right-handed alpha
Helix 26
26
B
76 82Right-handed alpha
Helix 27
27
B
128 144Right-handed alpha
Helix 28
28
B
161 172Right-handed alpha
Helix 29
29
B
183 187Right-handed alpha
Helix 30
30
B
187 197Right-handed alpha
Helix 31
31
B
209 215Right-handed 310
Helix 32
32
B
232 256Right-handed alpha
Helix 33
33
B
267 278Right-handed alpha
Helix 34
34
B
287 289Right-handed 310
Helix 35
35
B
290 296Right-handed alpha
Helix 36
36
B
301 305Right-handed 310
Helix 37
37
B
310 320Right-handed alpha
Helix 38
38
B
326 335Right-handed alpha
Helix 39
39
B
339 350Right-handed alpha
Helix 40
40
B
366 378Right-handed alpha
Helix 41
41
B
408 432Right-handed alpha
Helix 42
42
B
470 488Right-handed alpha
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There are 10 sheets in PDB entry 2R8K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
149 153first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
26 31anti-parallel
Strand 4
A
260 265anti-parallel
Strand 5
A
282 285parallel
Strand 6
A
220 221parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 62first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
88 91parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
102 103first strand
Strand 2
A
94 96anti-parallel
Strand 3
A
124 126anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 178first strand
Strand 2
A
181 182anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
395 399first strand
Strand 2
A
498 508anti-parallel
Strand 3
A
438 448anti-parallel
Strand 4
A
454 460anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 150first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
26 31anti-parallel
Strand 4
B
260 265anti-parallel
Strand 5
B
282 285parallel
Strand 6
B
220 221parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 62first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
88 91parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 103first strand
Strand 2
B
94 96anti-parallel
Strand 3
B
124 126anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
176 178first strand
Strand 2
B
181 182anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
394 399first strand
Strand 2
B
498 509anti-parallel
Strand 3
B
437 448anti-parallel
Strand 4
B
454 460anti-parallel
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