Analysis of interatomic Contacts of Structural Units in PDB entry:
2RD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RD0 entry

There are 2 chains in PDB entry 2RD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -27GLY 1050
B
 ILE 442ASN 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 2RD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 53Right-handed alpha
Helix 2
2
A
54 56Right-handed 310
Helix 3
3
A
58 62Right-handed 310
Helix 4
4
A
64 68Right-handed 310
Helix 5
5
A
88 92Right-handed 310
Helix 6
6
A
108 114Right-handed alpha
Helix 7
7
A
117 122Right-handed alpha
Helix 8
8
A
133 143Right-handed alpha
Helix 9
9
A
143 156Right-handed alpha
Helix 10
10
A
159 166Right-handed alpha
Helix 11
11
A
181 186Right-handed alpha
Helix 12
12
A
216 230Right-handed alpha
Helix 13
13
A
235 241Right-handed alpha
Helix 14
14
A
246 248Right-handed 310
Helix 15
15
A
266 269Right-handed 310
Helix 16
16
A
270 280Right-handed alpha
Helix 17
17
A
290 295Right-handed alpha
Helix 18
18
A
487 493Right-handed alpha
Helix 19
19
A
494 499Right-handed alpha
Helix 20
20
A
538 542Right-handed 310
Helix 21
21
A
544 554Right-handed alpha
Helix 22
22
A
555 559Right-handed 310
Helix 23
23
A
561 563Right-handed 310
Helix 24
24
A
564 571Right-handed alpha
Helix 25
25
A
576 589Right-handed alpha
Helix 26
26
A
596 603Right-handed 310
Helix 27
27
A
608 623Right-handed alpha
Helix 28
28
A
624 631Right-handed alpha
Helix 29
29
A
631 639Right-handed alpha
Helix 30
30
A
640 642Right-handed 310
Helix 31
31
A
647 658Right-handed alpha
Helix 32
32
A
660 673Right-handed alpha
Helix 33
33
A
677 695Right-handed alpha
Helix 34
34
A
697 721Right-handed alpha
Helix 35
35
A
727 739Right-handed alpha
Helix 36
36
A
741 748Right-handed alpha
Helix 37
37
A
807 827Right-handed alpha
Helix 38
38
A
857 863Right-handed alpha
Helix 39
39
A
870 874Right-handed 310
Helix 40
40
A
878 883Right-handed alpha
Helix 41
41
A
888 912Right-handed alpha
Helix 42
42
A
957 964Right-handed alpha
Helix 43
43
A
974 994Right-handed alpha
Helix 44
44
A
994 1004Right-handed alpha
Helix 45
45
A
1019 1026Right-handed alpha
Helix 46
46
A
1031 1048Right-handed alpha
Helix 47
47
B
447 499Right-handed alpha
Helix 48
48
B
525 573Right-handed alpha
Helix 49
49
B
574 580Right-handed alpha
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There are 7 sheets in PDB entry 2RD0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 74anti-parallel
Strand 5
A
78 82anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 212first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
357 361anti-parallel
Strand 3
A
401 405anti-parallel
Strand 4
A
425 428anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
756 761anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 783anti-parallel
Strand 3
A
797 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 842anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il