Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2RDO entry
There are 34 chains in PDB entry 2RDO
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
G 2 | C 118 |
B
|
G 1 | U 2903 |
V
|
MET 1 | ALA 94 |
C
|
VAL 3 | ARG 269 |
D
|
MET 1 | ALA 209 |
E
|
MET 1 | ALA 201 |
F
|
ALA 1 | LYS 178 |
G
|
SER 1 | LYS 176 |
J
|
MET 1 | LEU 140 |
K
|
ILE 2 | VAL 122 |
L
|
MET 1 | GLU 144 |
M
|
MET 1 | MET 136 |
N
|
MET 1 | GLU 127 |
O
|
MET 1 | PHE 117 |
P
|
SER 1 | ASN 114 |
Q
|
ALA 1 | ALA 117 |
R
|
MET 1 | ALA 103 |
S
|
MET 1 | ARG 110 |
T
|
MET 1 | ALA 99 |
U
|
ALA 1 | ILE 102 |
W
|
ALA 1 | GLU 84 |
X
|
MET 1 | ALA 63 |
Y
|
ALA 1 | GLU 58 |
Z
|
MET 1 | LYS 70 |
0
|
ALA 1 | LYS 56 |
1
|
ALA 1 | LYS 54 |
2
|
MET 1 | LYS 46 |
3
|
PRO 1 | ALA 64 |
4
|
MET 1 | GLY 38 |
I
|
ALA 1 | ASP 141 |
H
|
MET 1 | GLU 149 |
9
|
LYS 5 | GLY 227 |
7
|
MET 1 | LYS 704 |
8
|
MET 1 | PHE 185 |
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There are no helices in PDB entry
2RDO
There are no sheets in PDB entry
2RDO
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il