Analysis of interatomic Contacts of Structural Units in PDB entry:
2RIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2RIB entry

There are 3 chains in PDB entry 2RIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 206PHE 355
B
VAL 204PHE 355
C
SER 206PHE 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2RIB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
206 234Right-handed alpha
Helix 2
2
A
254 264Right-handed alpha
Helix 3
3
A
273 288Right-handed alpha
Helix 4
4
A
324 328Right-handed 310
Helix 5
5
B
204 234Right-handed alpha
Helix 6
6
B
254 264Right-handed alpha
Helix 7
7
B
273 288Right-handed alpha
Helix 8
8
B
324 328Right-handed 310
Helix 9
9
C
206 234Right-handed alpha
Helix 10
10
C
254 264Right-handed alpha
Helix 11
11
C
273 288Right-handed alpha
Helix 12
12
C
324 328Right-handed 310
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There are 6 sheets in PDB entry 2RIB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
237 240first strand
Strand 2
A
243 253anti-parallel
Strand 3
A
348 355anti-parallel
Strand 4
A
267 268anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
291 292first strand
Strand 2
A
331 334anti-parallel
Strand 3
A
340 343anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
237 240first strand
Strand 2
B
243 253anti-parallel
Strand 3
B
348 355anti-parallel
Strand 4
B
267 268anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
291 292first strand
Strand 2
B
331 334anti-parallel
Strand 3
B
340 343anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
237 240first strand
Strand 2
C
243 253anti-parallel
Strand 3
C
348 355anti-parallel
Strand 4
C
267 268anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
291 292first strand
Strand 2
C
331 334anti-parallel
Strand 3
C
340 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il